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The map label for this gene is tolC [H]

Identifier: 117919177

GI number: 117919177

Start: 841529

End: 842836

Strand: Reverse

Name: tolC [H]

Synonym: Shewana3_0725

Alternate gene names: 117919177

Gene position: 842836-841529 (Counterclockwise)

Preceding gene: 117919185

Following gene: 117919173

Centisome position: 16.95

GC content: 45.57

Gene sequence:

>1308_bases
ATGAAATTTAAGATCCGTTCTCTATGCGCAGCATTAACTCTCGCGGCTTCCGCTCAAGCGGTTCAAGCAGATGATTTACT
GCAAATATATCAACAAGCACTGACGAGCGACCCGCTAGTATTACAAGCACAAGCTCAGCGTAATGCCTTGTTTGAAAAGA
TCGAACAAAACCGTGCACCACTGTTACCGACCATCAGCGCTAACGTGGGTTATGACAAAGCATGGAATGATCCTAAGAGC
GATACCAGTGGATTGACCGGTAGCCTAAAACTGAACCAAGTGATCTATGATCACAGCGCTTGGGTTGGTTTAAGCCTTGC
CGAAAAAGCCGCTTCTCAAGCCGATTCGACCTATGCATCAGCACTGCAAAATTTGATCACTCGTGTGACTAAAGCCTACT
TCGATGTATTAACGGCAAAAGATAACTACGAGTTCCAAGGCGCAGAAAAACGTGCGATTGAGCGTCAACTCGAGCAGACA
AAACAACGTTTTGCCGTAGGTTTAACTGCGATTACCGACGTACATGAAGCGCAAGCTCAGTATGACTTAGCCTCGGCGAC
TGAAATTTTGGCTGAAAACACACTAGCCAACAGCTACGAAGCCCTGCGTGAAATCACAGGTATCGATCACAAGACCATTA
ATGTGCTCGACACCAACCGTTTCTCTGCGGTAACGCCAGCACCTACCTCATCGAGTGAGTGGCTAAAGATTGCTGAAACC
AATAGCGTCGATCTGATGACTCAACGCATCGGTAAAGATATCGCTCAAGAGACCATTAGCCTCTACAAAGCGGGCCATAT
GCCATCTCTTAGCCTAAACGCTGGCTATAACAAAGGGTTAGAGCAAAAAACGGGCGACGTAAATGAGCCAGATTTTGACA
ATGTGAACGTTGGTGTGAACTTAAGCATTCCTATTTTCGAAGGCTTTAAAGTCACGTCACAGGTCAAAGAAGCACAATTC
CAATATGTGGAAGCGAGCGAGAAGTTAGAGCAAACCTACCGTAGTGTGGTGAAAAACGTTCGTAACAACTACAACAACGT
AGGCGCTTCAATCAGCTCTATCCGTGCCTATGAGCAGTCAGTGATTTCATCTGAAAGTGCGTTAAAGGCAACACAAGCGG
GTTTTGAAGTCGGTACTCGTACTATTGTTGACGTACTGAACCGTACCCGTGACCTGTACGACTCAAAACGTAAATTGTCG
GATGCTCGTTACAGCTACATCAACTCAATTATTGCGTTGAAACAAGCTGCAGGCACCTTAAATGAAGACGATGTTATCTC
TATCAACAACGGTCTAAAAGCCGAATAA

Upstream 100 bases:

>100_bases
AAGCGTCGGGAAGCGCAAACCGCCTTGGTAAAGGCATTACTTAGTCTAAACGAAGTTACATATTTCTCCTTTGGGAGAAT
TTGTCTAATAAGGACAGCAA

Downstream 100 bases:

>100_bases
GATAGCAATACCTCCCATAAAAAAACCGCCTTAATGGCGGTTTTTTTATGGCTGATTCATTAGCGCTAGCGCTTAGAAAT
CAATTTCTACACCGGCGAAA

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKAWNDPKS
DTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET
NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVNLSIPIFEGFKVTSQVKEAQF
QYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSIIALKQAAGTLNEDDVISINNGLKAE

Sequences:

>Translated_435_residues
MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKAWNDPKS
DTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET
NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVNLSIPIFEGFKVTSQVKEAQF
QYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSIIALKQAAGTLNEDDVISINNGLKAE
>Mature_435_residues
MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKAWNDPKS
DTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET
NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVNLSIPIFEGFKVTSQVKEAQF
QYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSIIALKQAAGTLNEDDVISINNGLKAE

Specific function: May be specialized for signal sequence independent, extracellular secretion in Gram-negative bacteria [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=427, Percent_Identity=44.0281030444965, Blast_Score=333, Evalue=1e-92,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47772; Mature: 47772

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCC
LLPTISANVGYDKAWNDPKSDTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS
CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC
NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE
LSIPIFEGFKVTSQVKEAQFQYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQS
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHH
VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIIALKQAAGTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NEDDVISINNGLKAE
CCCCEEEECCCCCCC
>Mature Secondary Structure
MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCC
LLPTISANVGYDKAWNDPKSDTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS
CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC
NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE
LSIPIFEGFKVTSQVKEAQFQYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQS
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHH
VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIIALKQAAGTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NEDDVISINNGLKAE
CCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]