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The map label for this gene is ycgG [H]

Identifier: 117919007

GI number: 117919007

Start: 646700

End: 648454

Strand: Reverse

Name: ycgG [H]

Synonym: Shewana3_0554

Alternate gene names: 117919007

Gene position: 648454-646700 (Counterclockwise)

Preceding gene: 117919008

Following gene: 117919005

Centisome position: 13.04

GC content: 50.26

Gene sequence:

>1755_bases
ATGACGAGTTTAGATCTGGCAAAAGAGCTTGATAAGATAATCGCAAAGGGGGCTATCAGCCCACTTTTTCAGCCCATATT
CAATATCTTGGAACACAAGATCCACGGATTTGAAGCGCTCAGCCGTGGGCCTGAGCATAGCCCGCTCTACTCACCCATTC
CACTGTTTAAAACCGCGGAACATCAGGGTAAATTGAGCGAACTCGAGACACTCTGCCGCCGCATTTCGCTGGAGCAATTC
AAACTACGCCAGTTCCAAGGCCGTTTGTTTATTAATATTTCCCCTAAGGCCCTACTCGGTCCCACTCATCCAAAGGGCAT
GACGCTGCAACTGCTACAGCAGCTGGGTATTTCACCGTCACAGGTGGTGATTGAGTTATCGGAGCAATATCCCGCAGACG
ATATCGACTTACTGAAATCTTGCCTGAATCACTATCGTAGCCAAGGTTTTATGACCGCTATCGATGACTTGGGAGCGGGT
TATTCGGGTTTACGGCTCTGGTCTGAGTTATCGCCCGACTATGTAAAAATCGATCGCCACTTTATTCACCAAATCGATTC
GACCCCGGTTAAACAAGAATTTGTGCGCTCGATTGTCGAACTGTGCCAGAGCCTCACCTGCAAAGTGATTGCCGAAGGGA
TTGAAACCCAAGAGGAACTCGCAGTACTCAAACAGCTAGGCATAGTCTATTGCCAAGGCTATTTACTCGGACGCCCCGAG
GCGCAGCCGAGCCGCGCGATGAAAGCGACCTTAGTGCCGAATAATACTCAAGTGCAGCCCAGATACAGTGAATCCGCCGA
AAGCCTCTGCACCAGCGCCATAACAGTGGTGCCGACACTCAAGCTTAAGCACTTAAGCGATACCTTTAGCTCTCAACCCG
CCTTACAGGCCGTGGTAGTGGTGCAAGATCAACTGCCGCTAGGGATTATTAGTAGAGCGACTTTGCTGGAGCTTTTTAGC
ACGCCCTATGGTCGAGCCCTGCATGAAAACCACGCCGTCAGTGAAGTGATGGACCCGCAAGTGTTGCAGATTGAAGCCAA
CGAGCCCCTGTCGATCGTGAGCCAATTACTGACCTCGGAGAGCGCCAATACCGTCGCCCAGCAATTTATCATTCTGCGCC
GTGGCAAGTTGCTCGGCATTGGCCACACTAAAGATTTGCTACAGCGGATCACCGAGCACAGGATCAAGATGGCAAGGCAT
GCCAATCCGTTAACGGATTTACCCGGTAATGTGCCTATTCAGGAAGAACTCAAACGCCTCAGAAACCAACAAAAGCCCTT
CTACTTGGCCTATTTTGATCTCTGTCAGTTCAAGCCCTATAACGATATTTACGGTTTCTGCCGCGGCGATGAGGTGATCT
GCGAGGTCGCCAATCTGTTAGTGAAATACAAGACGGACAACTGCTTTATCGGCCATGTCGGTGGCGATGACTTTGTGGTG
ATCAGCACCTGCGAGCAACTCATCGAGCGCTGCCAACGGATATTGACCGATTTTGAGGCCAACAAGTCGCTCTTTTATAG
TGCAGAGCATTGGCAAGCCCAAGAAATGCTCGCCGATGACAGGCAAGGACAAGCCTGTTATCACAAGTTAATCAGCCTGT
GTGTCGGCGTACTTACTCCCGCCCATACCTATAACTGCAATGAACATAGCCTATCGACCTTGAGTGCCAAGGCAAAAAAA
CAGGCAAAATCCGCGAGTAACGGATTTTGCCTGTTAGAAGAGAGAGACATAAGCCCCCAAGCATTGAGTGCCTAG

Upstream 100 bases:

>100_bases
CTCTCATTTCCTGTACACGGGTTTTCGGCAAACAAAATTGTCATCATTTTGTCATTTCTAAGTCATAGACTCCGCAAACA
TTGTCGTGGGGGCTGAAGTA

Downstream 100 bases:

>100_bases
GCTGGAATTATCAGCCTAGAGTTTCGGTGCAACGGTCTTTTTTAACCAATCACTTAGCATTTTGGTTTCATAGTTAAATG
GCTTGTCATTTAACGGCTGA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 583

Protein sequence:

>584_residues
MTSLDLAKELDKIIAKGAISPLFQPIFNILEHKIHGFEALSRGPEHSPLYSPIPLFKTAEHQGKLSELETLCRRISLEQF
KLRQFQGRLFINISPKALLGPTHPKGMTLQLLQQLGISPSQVVIELSEQYPADDIDLLKSCLNHYRSQGFMTAIDDLGAG
YSGLRLWSELSPDYVKIDRHFIHQIDSTPVKQEFVRSIVELCQSLTCKVIAEGIETQEELAVLKQLGIVYCQGYLLGRPE
AQPSRAMKATLVPNNTQVQPRYSESAESLCTSAITVVPTLKLKHLSDTFSSQPALQAVVVVQDQLPLGIISRATLLELFS
TPYGRALHENHAVSEVMDPQVLQIEANEPLSIVSQLLTSESANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARH
ANPLTDLPGNVPIQEELKRLRNQQKPFYLAYFDLCQFKPYNDIYGFCRGDEVICEVANLLVKYKTDNCFIGHVGGDDFVV
ISTCEQLIERCQRILTDFEANKSLFYSAEHWQAQEMLADDRQGQACYHKLISLCVGVLTPAHTYNCNEHSLSTLSAKAKK
QAKSASNGFCLLEERDISPQALSA

Sequences:

>Translated_584_residues
MTSLDLAKELDKIIAKGAISPLFQPIFNILEHKIHGFEALSRGPEHSPLYSPIPLFKTAEHQGKLSELETLCRRISLEQF
KLRQFQGRLFINISPKALLGPTHPKGMTLQLLQQLGISPSQVVIELSEQYPADDIDLLKSCLNHYRSQGFMTAIDDLGAG
YSGLRLWSELSPDYVKIDRHFIHQIDSTPVKQEFVRSIVELCQSLTCKVIAEGIETQEELAVLKQLGIVYCQGYLLGRPE
AQPSRAMKATLVPNNTQVQPRYSESAESLCTSAITVVPTLKLKHLSDTFSSQPALQAVVVVQDQLPLGIISRATLLELFS
TPYGRALHENHAVSEVMDPQVLQIEANEPLSIVSQLLTSESANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARH
ANPLTDLPGNVPIQEELKRLRNQQKPFYLAYFDLCQFKPYNDIYGFCRGDEVICEVANLLVKYKTDNCFIGHVGGDDFVV
ISTCEQLIERCQRILTDFEANKSLFYSAEHWQAQEMLADDRQGQACYHKLISLCVGVLTPAHTYNCNEHSLSTLSAKAKK
QAKSASNGFCLLEERDISPQALSA
>Mature_583_residues
TSLDLAKELDKIIAKGAISPLFQPIFNILEHKIHGFEALSRGPEHSPLYSPIPLFKTAEHQGKLSELETLCRRISLEQFK
LRQFQGRLFINISPKALLGPTHPKGMTLQLLQQLGISPSQVVIELSEQYPADDIDLLKSCLNHYRSQGFMTAIDDLGAGY
SGLRLWSELSPDYVKIDRHFIHQIDSTPVKQEFVRSIVELCQSLTCKVIAEGIETQEELAVLKQLGIVYCQGYLLGRPEA
QPSRAMKATLVPNNTQVQPRYSESAESLCTSAITVVPTLKLKHLSDTFSSQPALQAVVVVQDQLPLGIISRATLLELFST
PYGRALHENHAVSEVMDPQVLQIEANEPLSIVSQLLTSESANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARHA
NPLTDLPGNVPIQEELKRLRNQQKPFYLAYFDLCQFKPYNDIYGFCRGDEVICEVANLLVKYKTDNCFIGHVGGDDFVVI
STCEQLIERCQRILTDFEANKSLFYSAEHWQAQEMLADDRQGQACYHKLISLCVGVLTPAHTYNCNEHSLSTLSAKAKKQ
AKSASNGFCLLEERDISPQALSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential). Note=Found associated with the RNA degradosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=30.0847457627119, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=28.3333333333333, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=153, Percent_Identity=33.9869281045752, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=29.6296296296296, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081743, Length=220, Percent_Identity=30.9090909090909, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787541, Length=214, Percent_Identity=30.3738317757009, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787410, Length=241, Percent_Identity=26.9709543568465, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI226510982, Length=175, Percent_Identity=33.1428571428571, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=28.1632653061224, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=25.4098360655738, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788849, Length=153, Percent_Identity=32.6797385620915, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1786507, Length=149, Percent_Identity=29.5302013422819, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=26.4462809917355, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 65377; Mature: 65246

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLDLAKELDKIIAKGAISPLFQPIFNILEHKIHGFEALSRGPEHSPLYSPIPLFKTAE
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
HQGKLSELETLCRRISLEQFKLRQFQGRLFINISPKALLGPTHPKGMTLQLLQQLGISPS
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHCCCHH
QVVIELSEQYPADDIDLLKSCLNHYRSQGFMTAIDDLGAGYSGLRLWSELSPDYVKIDRH
HHHEEEHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
FIHQIDSTPVKQEFVRSIVELCQSLTCKVIAEGIETQEELAVLKQLGIVYCQGYLLGRPE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCC
AQPSRAMKATLVPNNTQVQPRYSESAESLCTSAITVVPTLKLKHLSDTFSSQPALQAVVV
CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
VQDQLPLGIISRATLLELFSTPYGRALHENHAVSEVMDPQVLQIEANEPLSIVSQLLTSE
EECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCEEEEECCCCHHHHHHHHHCC
SANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARHANPLTDLPGNVPIQEELKRL
CHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RNQQKPFYLAYFDLCQFKPYNDIYGFCRGDEVICEVANLLVKYKTDNCFIGHVGGDDFVV
HCCCCCEEEEEEHHHCCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEECCCCCEEE
ISTCEQLIERCQRILTDFEANKSLFYSAEHWQAQEMLADDRQGQACYHKLISLCVGVLTP
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
AHTYNCNEHSLSTLSAKAKKQAKSASNGFCLLEERDISPQALSA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCC
>Mature Secondary Structure 
TSLDLAKELDKIIAKGAISPLFQPIFNILEHKIHGFEALSRGPEHSPLYSPIPLFKTAE
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
HQGKLSELETLCRRISLEQFKLRQFQGRLFINISPKALLGPTHPKGMTLQLLQQLGISPS
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHCCCHH
QVVIELSEQYPADDIDLLKSCLNHYRSQGFMTAIDDLGAGYSGLRLWSELSPDYVKIDRH
HHHEEEHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
FIHQIDSTPVKQEFVRSIVELCQSLTCKVIAEGIETQEELAVLKQLGIVYCQGYLLGRPE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCC
AQPSRAMKATLVPNNTQVQPRYSESAESLCTSAITVVPTLKLKHLSDTFSSQPALQAVVV
CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEE
VQDQLPLGIISRATLLELFSTPYGRALHENHAVSEVMDPQVLQIEANEPLSIVSQLLTSE
EECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCEEEEECCCCHHHHHHHHHCC
SANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARHANPLTDLPGNVPIQEELKRL
CHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RNQQKPFYLAYFDLCQFKPYNDIYGFCRGDEVICEVANLLVKYKTDNCFIGHVGGDDFVV
HCCCCCEEEEEEHHHCCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEECCCCCEEE
ISTCEQLIERCQRILTDFEANKSLFYSAEHWQAQEMLADDRQGQACYHKLISLCVGVLTP
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
AHTYNCNEHSLSTLSAKAKKQAKSASNGFCLLEERDISPQALSA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]