Click here to switch to the map view.

The map label for this gene is tapC [H]

Identifier: 117918875

GI number: 117918875

Start: 475431

End: 476702

Strand: Reverse

Name: tapC [H]

Synonym: Shewana3_0418

Alternate gene names: 117918875

Gene position: 476702-475431 (Counterclockwise)

Preceding gene: 117918876

Following gene: 117918874

Centisome position: 9.59

GC content: 44.97

Gene sequence:

>1272_bases
ATGGCTACGGCAACTACTGTAAAAAAGCCTCGTGCCAAAAAGAGCGAGCAAAAAAGCCAACCCAAAATCTATACCTTCGA
ATGGAAAGGCCTTAATCGCGACGGTCAGAAAACCAGTGGTGAACTGAGGGGGGCCTCTGCGGCCGAAATTCGCAGCCAAC
TCAAATCCCAAGGTGTAAACCCTAAAACCGTACGCAAGCAATCAGCGGCCCTATTTAAGCTAGGTGACGCAAAAATTAGT
CCAATGGATATTGCCATGATTACACGGCAAATTGCGACAATGCTTGCTGCTGGCGTTCCCTTAGTCACGACTATTGAGTT
ACTCGGTCGCGGTCATGAAAAAGCAAAAATGCGTGAGCTATTAGGCTCCATTCTTTCCGAAATCCAATCGGGTATTCCAC
TATCAGACTCACTACGCCCCCATAGACGCTATTTCGATGATCTCTATGTTGATTTAGTAGCTGCGGGTGAACACTCGGGA
TCTTTGGACGTAGTATTCGACCGTATTGCGACATACCGTGAAAAGTCTGAAGCATTGAAATCTAAGATAAAAAAAGCCAT
GTTTTATCCGGCTGCAGTAGTCGTCGTAGCCATTTTAGTAACAACTCTACTGTTACTCTTTGTTGTCCCGCAGTTTGAAG
AGATTTTTAAAGGATTTGGCGCGGAATTACCTGCTTTTACTCAGTTGGTGCTTCATATATCCAGAGGCTTACAATCCTCT
TGGTATATTTTTTTGGGAGCTATCGTAGCTGGAGTATTTTTGTTTGTTCGCGCCCATAGAAACTCGCAAATGGTTAGAGA
TCGAGTGGATGAAGCCGTATTAAAAATTCCTGCAATTGGACCTATCTTGCATAAAGGTGCAATGGCGCGTTTTGCTCGAA
CCTTAGCCACGACTTTTGCCGCAGGGGTTCCGTTAATCGATGGTTTAGAATCTGCAGCTGGTGCATCAGGAAACGCTGTA
TATCGAAAAGCCATTTTGAAAATCCGTCAAGAGGTGATGGCCGGGATGCAAATGAACGTCGCCATGCGTACCACAGGGCT
TTTCCCCGATATGTTGATCCAAATGGTGATGATCGGTGAAGAATCAGGTTCACTCGATAATATGCTAAACAAAGTAGCCA
ATATTTATGAGATGCAGGTCGATGATGCGGTTGATGGCTTATCAAGCCTTATCGAGCCCATTATGATGGTGGTTATTGGC
ACGGTTGTTGGCGGCCTCATTGTCGCTATGTACTTACCAATCTTCCAAATGGGTAAAGTTGTAGGTGGTTAA

Upstream 100 bases:

>100_bases
AAAGTGCTCGATAGTTTTTATTTAATCGCTTTTGTTCCATTTTTTATACTAACCTAGTACCAATAAAGCTTTAATTAATC
ACGCCTAACAGGGATTATCT

Downstream 100 bases:

>100_bases
GCCGTTGTAGACTCAATGTTTTCCAGAATTGAAACTGTACTTTTAATAATAACAAGTAACAATGATGACTGACTTTATTT
CTCTTTTAAGCCACTCTCTA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MATATTVKKPRAKKSEQKSQPKIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKIS
PMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Sequences:

>Translated_423_residues
MATATTVKKPRAKKSEQKSQPKIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKIS
PMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG
>Mature_422_residues
ATATTVKKPRAKKSEQKSQPKIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKISP
MDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGS
LDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSW
YIFLGAIVAGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKVVGG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=401, Percent_Identity=28.6783042394015, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1786295, Length=404, Percent_Identity=29.2079207920792, Blast_Score=177, Evalue=9e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 46015; Mature: 45884

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATATTVKKPRAKKSEQKSQPKIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVN
CCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCC
PKTVRKQSAALFKLGDAKISPMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMREL
HHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
LGSILSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
SKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
WYIFLGAIVAGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AGVPLIDGLESAAGASGNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGE
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHCC
ESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGG
CCC
>Mature Secondary Structure 
ATATTVKKPRAKKSEQKSQPKIYTFEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVN
CCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCC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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]