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The map label for this gene is 117918830

Identifier: 117918830

GI number: 117918830

Start: 410678

End: 411244

Strand: Reverse

Name: 117918830

Synonym: Shewana3_0373

Alternate gene names: NA

Gene position: 411244-410678 (Counterclockwise)

Preceding gene: 117918832

Following gene: 117918829

Centisome position: 8.27

GC content: 44.09

Gene sequence:

>567_bases
ATGGATAGTAAACGCGACTTAATACTCCGCTCCGCCGAAAAAATTATTGCGACAGAGGGATTACATAATCTTTCAATGCA
AAAGCTTGCCGCAGATGCAGGAGTCGCTGCAGGTACGATTTATCGCTACTTTAAAGACAAAGAAGATTTGATCATTGAAC
TGCGTAAAGACGTATTACAACAAATTGCCAGCAAGTTGCTTGAAAACATTAATGAAGGTAGCTTTGACCAAAAATTTCGC
CGCCTATGGTTCAACATTGTGGCACTGGGGCGTAAGCAATCCCATGCAAATTTAAGCTTTGCACAGTATTCCCACCTTCC
AGGTGTCGATGCGCCTGAGCATCAAGCCTTTGAAAGGGAGATTTTCCAGCAGTTACATCAACTATTTGAGCAGGCGAAAG
ATCAAGGCGTCATCCAACCATTGAATAATGCCTTGTTATTTTCTATCGCCTTTGAGCCGGCTGTTGCGATAGGTAAACGC
CTTCGCCGCGGCCATTTGCAATGTACAGATACAGAGATCCAGCAGGCATGTGAGCTTTGCCTTCAGGCAATTTCTGTGAC
GAATTAA

Upstream 100 bases:

>100_bases
TTTTACCATTTTTTGAGCTAACTTGTTGCTAAGGTCAATTTCAACGATTAAAATCACCATGAATGAACGTTCATTCATCC
GTATAAATATTGGAAATTGA

Downstream 100 bases:

>100_bases
CTTAACTTTAGGAATCTTTAGCACCATGAAAAAATGGACTCTAAGTATGCTAGCGATCGCTGTACTTGCCTTTGGCTCAG
TGATCGGCTTTAACCTGATG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDSKRDLILRSAEKIIATEGLHNLSMQKLAADAGVAAGTIYRYFKDKEDLIIELRKDVLQQIASKLLENINEGSFDQKFR
RLWFNIVALGRKQSHANLSFAQYSHLPGVDAPEHQAFEREIFQQLHQLFEQAKDQGVIQPLNNALLFSIAFEPAVAIGKR
LRRGHLQCTDTEIQQACELCLQAISVTN

Sequences:

>Translated_188_residues
MDSKRDLILRSAEKIIATEGLHNLSMQKLAADAGVAAGTIYRYFKDKEDLIIELRKDVLQQIASKLLENINEGSFDQKFR
RLWFNIVALGRKQSHANLSFAQYSHLPGVDAPEHQAFEREIFQQLHQLFEQAKDQGVIQPLNNALLFSIAFEPAVAIGKR
LRRGHLQCTDTEIQQACELCLQAISVTN
>Mature_188_residues
MDSKRDLILRSAEKIIATEGLHNLSMQKLAADAGVAAGTIYRYFKDKEDLIIELRKDVLQQIASKLLENINEGSFDQKFR
RLWFNIVALGRKQSHANLSFAQYSHLPGVDAPEHQAFEREIFQQLHQLFEQAKDQGVIQPLNNALLFSIAFEPAVAIGKR
LRRGHLQCTDTEIQQACELCLQAISVTN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21303; Mature: 21303

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKRDLILRSAEKIIATEGLHNLSMQKLAADAGVAAGTIYRYFKDKEDLIIELRKDVLQ
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH
QIASKLLENINEGSFDQKFRRLWFNIVALGRKQSHANLSFAQYSHLPGVDAPEHQAFERE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
IFQQLHQLFEQAKDQGVIQPLNNALLFSIAFEPAVAIGKRLRRGHLQCTDTEIQQACELC
HHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LQAISVTN
HHHHHCCC
>Mature Secondary Structure
MDSKRDLILRSAEKIIATEGLHNLSMQKLAADAGVAAGTIYRYFKDKEDLIIELRKDVLQ
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH
QIASKLLENINEGSFDQKFRRLWFNIVALGRKQSHANLSFAQYSHLPGVDAPEHQAFERE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
IFQQLHQLFEQAKDQGVIQPLNNALLFSIAFEPAVAIGKRLRRGHLQCTDTEIQQACELC
HHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LQAISVTN
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]