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The map label for this gene is yccM [H]

Identifier: 117918764

GI number: 117918764

Start: 344934

End: 346181

Strand: Reverse

Name: yccM [H]

Synonym: Shewana3_0307

Alternate gene names: 117918764

Gene position: 346181-344934 (Counterclockwise)

Preceding gene: 117918765

Following gene: 117918759

Centisome position: 6.96

GC content: 52.24

Gene sequence:

>1248_bases
ATGGAATACGTGTATTCTATTTGCAGTATTAACATGACTTTTATTGAATCTCTCACCCTGATGTTGGCCCTGATGTATAT
CGCATCCTTAAGTTATTGGAGCGGTAAAAAATGGGGCGCCGTTGCCACCTTACTCTTAAGTGTTGGCGCCGTAGCGATTA
GCCTCTACTGGCCTTTGGCGCTCGCCCTAGCCATTGCCTTACCGCTGTGCCTGATAGCCAACAAGTTCGCCCCAGAGGAA
TTAAAGGGTGAGATAAAAATCAACACCCTGCGCGAAGGCTGCCAGCATCTGCTCGCGCTCTCACTGTTTATCGTCGCTAT
CCAATACTGCATCAATGCTATCCAGCTAAAACAAGGCATAGTGCCTTGGTTGATGCGCCCCGATGTCGCCGACGCCTTCT
TGCCTATCGCGGGCGGAATTGAATTAAAAGCCATTTTGGCGCTCAACCTGTGGGACCAAACACACCCCGCCGCAGCCGTC
ATGCTCTTCGCCGTGCTACTCACAGGCTTACTCTGCAAACGCGCCTTTTGTGGCTGGGCCTGCCCATTAGGACTCGCTGG
CGAATACCTCTACGCCTTACGCAAACGCTTTATCAAAGCAGAACTTGCGCCACCCGCATGGTTAGACTGGCCACTGCGTA
TGCTTAAGTACCTATTACTACTGGCGCTTTTTTACATCGTCATCGGTATGCCTAGCGAGTCGATTCCCTATTATCTACAG
GGCAACTACCACAAGATTGCCGATCTTAAGATGGCGCTGTTTTTTGTCACGCCTGGGCTCATTACCTTAGCCTGCTTTGC
TCTTATCCTCGCCTTAGCCGCATGGCGTCGCCAGGGATTTTGCCGCTATTTGTGTCCCTATGGCGCCATGCTGGGGATCT
TAAGTTTTGCCAGCCCACTCAAGATCCGCCGCGATACTCAGCATTGCCTGATCGAAGCCAAAGGCATGAAGTGCGATAAA
TGTACCCGCGCCTGCCCAGCCAACATCATAGTGCACACCAAAACCACGGTACGCAGCGACGAATGCCAAGCCTGTATGCG
CTGTGTGGCCGCTTGCCCTAAATCGGCGGCGCTCGGTTTTGGCCTCAAGTCGGGCCACAGAGTTAGCCATAAGGGCTTGT
TAGTTTTGTTATTATTGGCACTCTTTGCCCTGCCGCTGGGCGCCTATTTAGCCGGGTTCTGGCATAGCCAAACACCGGAC
AGTATCCGCATGGAGCTTATCCAAGTAATTGACCGCGTGGGTCATTAA

Upstream 100 bases:

>100_bases
GTGAGCTATCACTCGCTTTTACCACGGCATACTGTAAATATCGGATCTGCCGCACAATTTCGCTTTAGGCTCAAAAACTT
ATCCAACGAAAGCCACTCAG

Downstream 100 bases:

>100_bases
TTCTCTGATTTATTGATAAATAGATATAAAAAAGGTGCAGCCCAAGCTGCACCTTTTATGTACACGCTAAGTTTAAGTGC
TAATGATTAGGCAAGGTCGA

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MEYVYSICSINMTFIESLTLMLALMYIASLSYWSGKKWGAVATLLLSVGAVAISLYWPLALALAIALPLCLIANKFAPEE
LKGEIKINTLREGCQHLLALSLFIVAIQYCINAIQLKQGIVPWLMRPDVADAFLPIAGGIELKAILALNLWDQTHPAAAV
MLFAVLLTGLLCKRAFCGWACPLGLAGEYLYALRKRFIKAELAPPAWLDWPLRMLKYLLLLALFYIVIGMPSESIPYYLQ
GNYHKIADLKMALFFVTPGLITLACFALILALAAWRRQGFCRYLCPYGAMLGILSFASPLKIRRDTQHCLIEAKGMKCDK
CTRACPANIIVHTKTTVRSDECQACMRCVAACPKSAALGFGLKSGHRVSHKGLLVLLLLALFALPLGAYLAGFWHSQTPD
SIRMELIQVIDRVGH

Sequences:

>Translated_415_residues
MEYVYSICSINMTFIESLTLMLALMYIASLSYWSGKKWGAVATLLLSVGAVAISLYWPLALALAIALPLCLIANKFAPEE
LKGEIKINTLREGCQHLLALSLFIVAIQYCINAIQLKQGIVPWLMRPDVADAFLPIAGGIELKAILALNLWDQTHPAAAV
MLFAVLLTGLLCKRAFCGWACPLGLAGEYLYALRKRFIKAELAPPAWLDWPLRMLKYLLLLALFYIVIGMPSESIPYYLQ
GNYHKIADLKMALFFVTPGLITLACFALILALAAWRRQGFCRYLCPYGAMLGILSFASPLKIRRDTQHCLIEAKGMKCDK
CTRACPANIIVHTKTTVRSDECQACMRCVAACPKSAALGFGLKSGHRVSHKGLLVLLLLALFALPLGAYLAGFWHSQTPD
SIRMELIQVIDRVGH
>Mature_415_residues
MEYVYSICSINMTFIESLTLMLALMYIASLSYWSGKKWGAVATLLLSVGAVAISLYWPLALALAIALPLCLIANKFAPEE
LKGEIKINTLREGCQHLLALSLFIVAIQYCINAIQLKQGIVPWLMRPDVADAFLPIAGGIELKAILALNLWDQTHPAAAV
MLFAVLLTGLLCKRAFCGWACPLGLAGEYLYALRKRFIKAELAPPAWLDWPLRMLKYLLLLALFYIVIGMPSESIPYYLQ
GNYHKIADLKMALFFVTPGLITLACFALILALAAWRRQGFCRYLCPYGAMLGILSFASPLKIRRDTQHCLIEAKGMKCDK
CTRACPANIIVHTKTTVRSDECQACMRCVAACPKSAALGFGLKSGHRVSHKGLLVLLLLALFALPLGAYLAGFWHSQTPD
SIRMELIQVIDRVGH

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=336, Percent_Identity=35.1190476190476, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45843; Mature: 45843

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYVYSICSINMTFIESLTLMLALMYIASLSYWSGKKWGAVATLLLSVGAVAISLYWPLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LALAIALPLCLIANKFAPEELKGEIKINTLREGCQHLLALSLFIVAIQYCINAIQLKQGI
HHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPWLMRPDVADAFLPIAGGIELKAILALNLWDQTHPAAAVMLFAVLLTGLLCKRAFCGWA
CCHHCCCCHHHHHHCCCCCCEEEHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
CPLGLAGEYLYALRKRFIKAELAPPAWLDWPLRMLKYLLLLALFYIVIGMPSESIPYYLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
GNYHKIADLKMALFFVTPGLITLACFALILALAAWRRQGFCRYLCPYGAMLGILSFASPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
KIRRDTQHCLIEAKGMKCDKCTRACPANIIVHTKTTVRSDECQACMRCVAACPKSAALGF
HHHCCHHHHHEECCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCC
GLKSGHRVSHKGLLVLLLLALFALPLGAYLAGFWHSQTPDSIRMELIQVIDRVGH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEYVYSICSINMTFIESLTLMLALMYIASLSYWSGKKWGAVATLLLSVGAVAISLYWPLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LALAIALPLCLIANKFAPEELKGEIKINTLREGCQHLLALSLFIVAIQYCINAIQLKQGI
HHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPWLMRPDVADAFLPIAGGIELKAILALNLWDQTHPAAAVMLFAVLLTGLLCKRAFCGWA
CCHHCCCCHHHHHHCCCCCCEEEHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
CPLGLAGEYLYALRKRFIKAELAPPAWLDWPLRMLKYLLLLALFYIVIGMPSESIPYYLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
GNYHKIADLKMALFFVTPGLITLACFALILALAAWRRQGFCRYLCPYGAMLGILSFASPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
KIRRDTQHCLIEAKGMKCDKCTRACPANIIVHTKTTVRSDECQACMRCVAACPKSAALGF
HHHCCHHHHHEECCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCC
GLKSGHRVSHKGLLVLLLLALFALPLGAYLAGFWHSQTPDSIRMELIQVIDRVGH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]