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The map label for this gene is yhjC [H]

Identifier: 117918705

GI number: 117918705

Start: 278282

End: 279199

Strand: Reverse

Name: yhjC [H]

Synonym: Shewana3_0248

Alternate gene names: 117918705

Gene position: 279199-278282 (Counterclockwise)

Preceding gene: 117918707

Following gene: 117918702

Centisome position: 5.62

GC content: 47.71

Gene sequence:

>918_bases
ATGCAAGATAGACTACAAGCCATGCAAATTTTTATGCGAGTGGCTGAATTAGAGAGTTTTACTCAAGCCAGTATCAGCCT
TGGTCTGTCGAAAACCCATGTGTCGAATGTCGTAGCTCAGTTCGAAACCGCACTAGGTGCACGCTTACTACAACGCACCA
CTCGCACGGTGCGCCTCACTCAAGACGGCATAAGTTGTTATGAGCGCTGCAAAAACTTGCTCACCGACTATCAAGAATTA
GAAAGCCTTTTCCAGCTACAGGCGACGCAAATTTCGGGGCGCTTAAGAGTCGATATGTCTACAGGGATTGCGCGCAACTT
AGTGCTTCCTCATCTTCCTGACTTTATTGAACAATATCCCCAAATTGAGTTGGAGCTAAGCAGCACCGACCGTAAAGTCG
ATATTGTCGCCGAAGGTTTTGACTGCGTGATCCGCGTTGGCAGCGTGCAGCAAGAAGGCGTTATCGCTAAAAAGATTGGC
CACTTTAAGATGCTCAATTGTGTCAGCCCAAGCTACATCACAAAATACGGCAGACCCTCGAATATAGAAGAACTTAGCCA
TGGGCATAAGCTTATCCACTACGTTGGCCAGTTAGGCGGCAGTGATTCAGGATTTGAGTATCTGAGCCAAGATAACCACG
AACTATGCGCCCTAGCCTTACCTAAGCTAATCACAGTCAATAATGCCGATGCCTACAGCGCGGCCTGCCTAGCGGGATTA
GGGATTATTCAAGCGCCGAATATTGGGGTGGCAAAATATCTCCAAACCGGAGAACTGATTGAGATCCTGCCAGATTACCC
AGCCCCCTCAATGCCAGTGAGCCTGCTCTATCCCCATAGACGACATCTTTCTAAAAGACTTCAGGTATTTATGGCTTGGT
TGACCGAGCTGCTAACGCCTTTTTTAGTATCGCGTTAA

Upstream 100 bases:

>100_bases
CGCACAGCATGGCGATTCCACTACACAGCTTATTACTTGCACAAAGAGGGATAAACACACTATAAATGGCAAGACTGTTA
GCTATTAGAGAACAATTGCG

Downstream 100 bases:

>100_bases
CGGCCAGTCTCGATATTCGCTAACCGCTGCGACAGTTCCGCCATCGAGCTTGCCGTGTGGGGATCGCACTCAGGGTTGGC
TACTGGGCTAAATTCGAGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCYERCKNLLTDYQEL
ESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYPQIELELSSTDRKVDIVAEGFDCVIRVGSVQQEGVIAKKIG
HFKMLNCVSPSYITKYGRPSNIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAGL
GIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTELLTPFLVSR

Sequences:

>Translated_305_residues
MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCYERCKNLLTDYQEL
ESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYPQIELELSSTDRKVDIVAEGFDCVIRVGSVQQEGVIAKKIG
HFKMLNCVSPSYITKYGRPSNIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAGL
GIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTELLTPFLVSR
>Mature_305_residues
MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCYERCKNLLTDYQEL
ESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYPQIELELSSTDRKVDIVAEGFDCVIRVGSVQQEGVIAKKIG
HFKMLNCVSPSYITKYGRPSNIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAGL
GIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTELLTPFLVSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=46.3333333333333, Blast_Score=280, Evalue=7e-77,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.5084745762712, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=27.6094276094276, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=30.0675675675676, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=26.1016949152542, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.2721088435374, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=28.3783783783784, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=25.4966887417219, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789173, Length=204, Percent_Identity=28.921568627451, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=26.0726072607261, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=23.3898305084746, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790011, Length=268, Percent_Identity=23.5074626865672, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34035; Mature: 34035

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGISCYERCKNLLTDYQELESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCHHHHCCCCCCHHHHHHCC
QIELELSSTDRKVDIVAEGFDCVIRVGSVQQEGVIAKKIGHFKMLNCVSPSYITKYGRPS
CEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHCCHHHHHHCCHHHHHHCCCCC
NIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAGL
CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHCHHEEECCCCHHHHHHHHHC
GIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTELLTP
CCEECCCCCHHHHHCCCCHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FLVSR
HHCCC
>Mature Secondary Structure
MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGISCYERCKNLLTDYQELESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCHHHHCCCCCCHHHHHHCC
QIELELSSTDRKVDIVAEGFDCVIRVGSVQQEGVIAKKIGHFKMLNCVSPSYITKYGRPS
CEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHCCHHHHHHCCHHHHHHCCCCC
NIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAGL
CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHCHHEEECCCCHHHHHHHHHC
GIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTELLTP
CCEECCCCCHHHHHCCCCHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FLVSR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]