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The map label for this gene is hslR [H]

Identifier: 117918607

GI number: 117918607

Start: 173402

End: 173800

Strand: Reverse

Name: hslR [H]

Synonym: Shewana3_0149

Alternate gene names: 117918607

Gene position: 173800-173402 (Counterclockwise)

Preceding gene: 117918620

Following gene: 117918606

Centisome position: 3.5

GC content: 46.12

Gene sequence:

>399_bases
ATGACGCAAAGTTCAGGCGACAGTGGCAGCGTTCGACTCGATAAGTGGTTATGGGCCGCACGTTTTTATAAAACCCGTGC
CATTGCCAAAGAAATGATCAACGGCGGCAAAGTACATTACAACGGTGCTCGTACCAAATCTAGTAAGAATGCCGAGATAG
GTGCCGTCCTTAAGATACGACAGGGATATGACGATAAAGAGATCGTCATAAAAAAATTATCTGAAATGCGCCAAAGCGCG
ACGATTGCGCAGGAATTGTACGAAGAAACGGCTGCTAGTGTGGCCAAGCGTGCGGTAAACGCCGAAGCAAGACGATTGAA
TATTCTCAATAATCCTGCGCCCGACCATAAACCGGATAAAAAGCAACGACGCCAACTTATCCGTTTTAAAGAATGCTAA

Upstream 100 bases:

>100_bases
AAGGGTGTGAAGCACACCACCCTTTAACATCATCGCAATGCGACTTAGGCATTTTATTGCTCAGCATGTGAGCTCATCGA
GCTTTTATCTTGGAGACACT

Downstream 100 bases:

>100_bases
GAATTACGTAAAAGTTACCTAACAGTGAGATACAAGATGATACAAGATATTTTAAACCGCTACCTGTTCGACAATGCCGA
TGTGCGTGGTGAACTCGTAC

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTQSSGDSGSVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGARTKSSKNAEIGAVLKIRQGYDDKEIVIKKLSEMRQSA
TIAQELYEETAASVAKRAVNAEARRLNILNNPAPDHKPDKKQRRQLIRFKEC

Sequences:

>Translated_132_residues
MTQSSGDSGSVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGARTKSSKNAEIGAVLKIRQGYDDKEIVIKKLSEMRQSA
TIAQELYEETAASVAKRAVNAEARRLNILNNPAPDHKPDKKQRRQLIRFKEC
>Mature_131_residues
TQSSGDSGSVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGARTKSSKNAEIGAVLKIRQGYDDKEIVIKKLSEMRQSAT
IAQELYEETAASVAKRAVNAEARRLNILNNPAPDHKPDKKQRRQLIRFKEC

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=120, Percent_Identity=61.6666666666667, Blast_Score=156, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 14961; Mature: 14830

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSSGDSGSVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGARTKSSKNAEIGAVLKIR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHEEEC
QGYDDKEIVIKKLSEMRQSATIAQELYEETAASVAKRAVNAEARRLNILNNPAPDHKPDK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
KQRRQLIRFKEC
HHHHHHHHHCCC
>Mature Secondary Structure 
TQSSGDSGSVRLDKWLWAARFYKTRAIAKEMINGGKVHYNGARTKSSKNAEIGAVLKIR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHEEEC
QGYDDKEIVIKKLSEMRQSATIAQELYEETAASVAKRAVNAEARRLNILNNPAPDHKPDK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
KQRRQLIRFKEC
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]