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The map label for this gene is ribB [H]

Identifier: 117918592

GI number: 117918592

Start: 152062

End: 152715

Strand: Reverse

Name: ribB [H]

Synonym: Shewana3_0134

Alternate gene names: 117918592

Gene position: 152715-152062 (Counterclockwise)

Preceding gene: 117918596

Following gene: 117918591

Centisome position: 3.07

GC content: 50.92

Gene sequence:

>654_bases
ATGAATCAGTCTTTACTTGCTCCTTTTGGTACTGCTATCGAACGCGTTGAAGCGGGTCTTGAAGCCCTGCGTCAAGGCCA
AGGTGTGTTGGTCGTCGACGACGAAGATAGAGAAAACGAAGGCGACTTAATTTTTGCCGCCGAGTCACTCACCAATGCTC
AAATGGCTATGCTTATTCGCGAATGCAGCGGTATCGTGTGTTTGTGTTTACCAGATGAAAAGGTCAAAGCCCTTGAGCTG
CCACCTATGGTAGAAAACAACTCGAGCCAATATGGCACCGCCTTTACCGTGAGTATCGAAGCCAAAGTAGGTGTTACCAC
TGGCGTTTCGGCTGCTGACCGTGTCACCACCATTAAAACCGCTATTGCCGACAATGCTAAGCCAAGCGATTTAGCGCGCC
CAGGCCATGTGTATCCACTGCGCGCCCAACCCGGCGGCGTATTAACTCGCCGTGGCCACACCGAAGGCACTATCGATTTA
ATGCAACTGGCCGGACTCAAACCTGCGGGCGTGTTATGTGAAGTCACCAATCCCGATGGCACTATGGCGCGTCTGCCAGA
AATTATCGCCTTTGGTGCCGAGCACAATATGCCTGTGCTGACGATTGAAGATATCGTTATTTACCGTAAGTCGTTATTAG
CCAACGTTGGCTAA

Upstream 100 bases:

>100_bases
GGGTCTATTGCTACAGCTCAATCCCTTTGGGGTAACGGCTGTATTTCTGCACGCCCTGATTCTGGAAATTCCCATGTCGT
ATTTTTGAAGGATATTAACC

Downstream 100 bases:

>100_bases
TTAACCCCCAAAGCGGGATGCTAGTTAAAGGACGTCGGCTCTGCCCACGTCCTTTTTTATTTAGCAAACATCATGCTAAA
AAGCGGGAGAATTTGTATCA

Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNQSLLAPFGTAIERVEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALEL
PPMVENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKTAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
MQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGAEHNMPVLTIEDIVIYRKSLLANVG

Sequences:

>Translated_217_residues
MNQSLLAPFGTAIERVEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALEL
PPMVENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKTAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
MQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGAEHNMPVLTIEDIVIYRKSLLANVG
>Mature_217_residues
MNQSLLAPFGTAIERVEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALEL
PPMVENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKTAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
MQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGAEHNMPVLTIEDIVIYRKSLLANVG

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHBP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1789420, Length=211, Percent_Identity=69.6682464454976, Blast_Score=309, Evalue=8e-86,
Organism=Saccharomyces cerevisiae, GI6320695, Length=203, Percent_Identity=41.871921182266, Blast_Score=172, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422 [H]

Pfam domain/function: PF00926 DHBP_synthase [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 23052; Mature: 23052

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLLAPFGTAIERVEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIR
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHH
ECSGIVCLCLPDEKVKALELPPMVENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKT
HCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEECCCCCHHHHHHHHH
AIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDG
HHCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCC
TMARLPEIIAFGAEHNMPVLTIEDIVIYRKSLLANVG
HHHHHHHHEEECCCCCCCEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQSLLAPFGTAIERVEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIR
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHH
ECSGIVCLCLPDEKVKALELPPMVENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKT
HCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEECCCCCHHHHHHHHH
AIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDG
HHCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCC
TMARLPEIIAFGAEHNMPVLTIEDIVIYRKSLLANVG
HHHHHHHHEEECCCCCCCEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA