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The map label for this gene is yrdA [H]

Identifier: 117918504

GI number: 117918504

Start: 49888

End: 50436

Strand: Reverse

Name: yrdA [H]

Synonym: Shewana3_0045

Alternate gene names: 117918504

Gene position: 50436-49888 (Counterclockwise)

Preceding gene: 117918507

Following gene: 117918501

Centisome position: 1.01

GC content: 49.36

Gene sequence:

>549_bases
ATGTCAGGGCCACTCAGAACTTACCAAGGGATTCATCCACAACTCGGCGATAATGTGTATGTAGACTCTGCTTCGGTACT
CGTTGGCGATATCGCTTTAGATACAGATGCCAGCATTTGGCCTATGGTGGCGGCGCGTGGTGACGTAAACCACATTCGTA
TTGGTAAGCGCTCCAATGTGCAGGATGGCAGCATATTGCACGTGACCCGTAAATTCGCCTCTCGTCCTGACGGTCATCCA
TTGATCATTGGTGATGATGTGACGATTGGGCATAAAGCGATGCTGCATGGCTGCAAGGTTGGCAATCGTGTATTAGTGGG
GATGGGCGCGATTATCCTCGATGGCGCCATATTAGAAGATGATGTGATTTTAGGTGCGGGTTCGTTAGTACCGCCAGGTA
AGGTGCTGCAGAGCGGCTACTTATATGTCGGCAGCCCTGCAAAACAGGCGCGACCTTTAACCGAAGCGGAATTGAAGTTT
TTACCTGAATCTGCAGATAACTATGTGCGCTTGAAAAACGAATACTTGGCAGAACCTCAGCCAGAATAA

Upstream 100 bases:

>100_bases
AAGATAATTAGCTTTTTTACACTGTTCGTTGGATATTTGACCTGACCAGTCAGTTTTTAGCCTTTATAATGCGAAAAACC
ACTCAATTAGGGACTTTTTT

Downstream 100 bases:

>100_bases
TGTTTCTATTAAATCGAGATGGCAGTATTTAAGCTGCCATCTCGCTTGTGTTGTGCTTAGCCTATTGCGTTGTACTTAGC
CTAAGTGTACTGCGCCAAAC

Product: carbonic anhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSGPLRTYQGIHPQLGDNVYVDSASVLVGDIALDTDASIWPMVAARGDVNHIRIGKRSNVQDGSILHVTRKFASRPDGHP
LIIGDDVTIGHKAMLHGCKVGNRVLVGMGAIILDGAILEDDVILGAGSLVPPGKVLQSGYLYVGSPAKQARPLTEAELKF
LPESADNYVRLKNEYLAEPQPE

Sequences:

>Translated_182_residues
MSGPLRTYQGIHPQLGDNVYVDSASVLVGDIALDTDASIWPMVAARGDVNHIRIGKRSNVQDGSILHVTRKFASRPDGHP
LIIGDDVTIGHKAMLHGCKVGNRVLVGMGAIILDGAILEDDVILGAGSLVPPGKVLQSGYLYVGSPAKQARPLTEAELKF
LPESADNYVRLKNEYLAEPQPE
>Mature_181_residues
SGPLRTYQGIHPQLGDNVYVDSASVLVGDIALDTDASIWPMVAARGDVNHIRIGKRSNVQDGSILHVTRKFASRPDGHPL
IIGDDVTIGHKAMLHGCKVGNRVLVGMGAIILDGAILEDDVILGAGSLVPPGKVLQSGYLYVGSPAKQARPLTEAELKFL
PESADNYVRLKNEYLAEPQPE

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=178, Percent_Identity=60.1123595505618, Blast_Score=228, Evalue=1e-61,
Organism=Escherichia coli, GI1787667, Length=168, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87081681, Length=177, Percent_Identity=31.0734463276836, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19471; Mature: 19339

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPLRTYQGIHPQLGDNVYVDSASVLVGDIALDTDASIWPMVAARGDVNHIRIGKRSNV
CCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCEEEECCCCCCEEEECCCCCC
QDGSILHVTRKFASRPDGHPLIIGDDVTIGHKAMLHGCKVGNRVLVGMGAIILDGAILED
CCCCEEEEEHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCHHHHCCEEECC
DVILGAGSLVPPGKVLQSGYLYVGSPAKQARPLTEAELKFLPESADNYVRLKNEYLAEPQ
CEEEECCCCCCCHHHHHCCCEEEECCHHHCCCCCHHHHEECCCCCCCEEEECCHHCCCCC
PE
CC
>Mature Secondary Structure 
SGPLRTYQGIHPQLGDNVYVDSASVLVGDIALDTDASIWPMVAARGDVNHIRIGKRSNV
CCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCEEEECCCCCCEEEECCCCCC
QDGSILHVTRKFASRPDGHPLIIGDDVTIGHKAMLHGCKVGNRVLVGMGAIILDGAILED
CCCCEEEEEHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCHHHHCCEEECC
DVILGAGSLVPPGKVLQSGYLYVGSPAKQARPLTEAELKFLPESADNYVRLKNEYLAEPQ
CEEEECCCCCCCHHHHHCCCEEEECCHHHCCCCCHHHHEECCCCCCCEEEECCHHCCCCC
PE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]