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The map label for this gene is yrdD [H]

Identifier: 117918498

GI number: 117918498

Start: 45802

End: 46365

Strand: Direct

Name: yrdD [H]

Synonym: Shewana3_0039

Alternate gene names: 117918498

Gene position: 45802-46365 (Clockwise)

Preceding gene: 117918497

Following gene: 117918499

Centisome position: 0.92

GC content: 47.16

Gene sequence:

>564_bases
ATGTCTAAGATCGATGAACAACTATTTAGTGCCCATGAGCACGCGCTGGAAAAAGAATTCGAGCTATGCCCAGAGTGTGG
CAGCGAGTTGTCGGTAAAACATAGCAAACATGGGAGTTTTATTGGTTGTAACAACTATCCTACCTGCCAATATACCCGTC
CCTTAGTGCAGCATGAATCGATTGAAACCCAAGTGATTGAAGGCTCCAAGTGTCCCGAGTGCGGCCATGAGTTAGCGGTC
AAATCGGGGCGTTTCGGTATCTTTATCGGTTGCACTCAATATCCCAGTTGTACCCATATAGAAAGGCCAGATCAGGAGAA
CGATAAACCTGAGGTGGCATGTCCCGAATGCAAAACTGGCAAGCTTGAGCATCGTACCAGCCGTTTTGGTAAGAGTTTTT
ATGCTTGCAGTGCGTATCCCAAATGTAAATTCATCGTGAATTATCCTCCCGTTGCCGAAACTTGCCCGAGTTGTGGCTTT
GGTATTTTAGTCGAGCGCAAAGGGGCCGCGGGGATGCGTTTAGAATGTCCGCAAAAAAGCTGTAAATACAAACGCGCGCT
TTAG

Upstream 100 bases:

>100_bases
GAGAAAGGAGGCTAGCCCTCCTTTTTTGATGCCATAAGCTTGTTAATACCTGTGTGGTGAGTTATCTGCGGATTAGACGC
AATGACTGGTGGTAATGATT

Downstream 100 bases:

>100_bases
TGTGATCTGGCTCTAAAGATTTGGTCGTATAAACACCCTTGGGTATAATCCCCCATCGACCACGGATGGGGTGGCCAAGG
GCTAAAACGTGTTTGTAGAA

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKIDEQLFSAHEHALEKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHESIETQVIEGSKCPECGHELAV
KSGRFGIFIGCTQYPSCTHIERPDQENDKPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAETCPSCGF
GILVERKGAAGMRLECPQKSCKYKRAL

Sequences:

>Translated_187_residues
MSKIDEQLFSAHEHALEKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHESIETQVIEGSKCPECGHELAV
KSGRFGIFIGCTQYPSCTHIERPDQENDKPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAETCPSCGF
GILVERKGAAGMRLECPQKSCKYKRAL
>Mature_186_residues
SKIDEQLFSAHEHALEKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHESIETQVIEGSKCPECGHELAVK
SGRFGIFIGCTQYPSCTHIERPDQENDKPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAETCPSCGFG
ILVERKGAAGMRLECPQKSCKYKRAL

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=162, Percent_Identity=45.679012345679, Blast_Score=164, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20906; Mature: 20775

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
8.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDEQLFSAHEHALEKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHES
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHCC
IETQVIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIERPDQENDKPEVACPECKTG
CCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
KLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAETCPSCGFGILVERKGAAGMRLECPQKS
CCHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHCCCCCCEEEEECCCCCCCEEECCHHH
CKYKRAL
HHHCCCC
>Mature Secondary Structure 
SKIDEQLFSAHEHALEKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHES
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHCC
IETQVIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIERPDQENDKPEVACPECKTG
CCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
KLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAETCPSCGFGILVERKGAAGMRLECPQKS
CCHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHCCCCCCEEEEECCCCCCCEEECCHHH
CKYKRAL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]