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The map label for this gene is dgdR [H]

Identifier: 117918473

GI number: 117918473

Start: 16699

End: 17547

Strand: Direct

Name: dgdR [H]

Synonym: Shewana3_0014

Alternate gene names: 117918473

Gene position: 16699-17547 (Clockwise)

Preceding gene: 117918471

Following gene: 117918474

Centisome position: 0.34

GC content: 48.06

Gene sequence:

>849_bases
ATGGAAATAGAAGCGTTGCGCAGCTTTGTGGCTTTTGTCGATACCGGGAGTTTTACCCGTGCGGCAATGCAAACCTATAA
GACTCAATCTGCCGTCAGTATGCAAATGAAGCGCTTAGAGCAAGAGTTGGGAAAAACGCTCTTTGTAAAAGAGGGGCGAA
ACTTAGTCTTATCTACCGAAGGCCAACGTTTTGGCTTGTACGCTAAGCAATTACTGCAATTGCACGATGAGACTGTCACT
ACCATTAAGCAGACCCAAGTCGGCGCACAATTGCATTTGGGCTGTCCAGATGACTATGCCGAATCCGTGTTGCCGCGGAT
AGTGGCGTTGTTACATGGTCACATTAAGCAACTCGATCTTCAAATTACCTGCGCCTCGAGCCAAAAGCTGCGGATCATGC
TGGATTCTGGGCAGCTCGATGCGGCGATAGTGACTCGTTTGCCCGAGTCCGATGAAGGCTACTTATTACAAACCTCAAAA
GGCGTTTGGGTGAGCGCGAGTGGTTCGAACTTGAGTGATGCCGATCCCTTACCCATAGCGCTATTCCAAAAGGACTGTAA
ATTCCATATTGCGGCGTTAGATGGATTGATGAAGCAAGATAGGCATTATCAGTTGTTAGCCTGTAGCAGCAGTGCTGCGG
CTCTTAACGCGATAGTGGCTAAGAATTTGGCTATTAGTGCCATGGCCGAATGCAGTGTATCGGCACCACTGAATATTATT
GATTCTGGAACACTTCCACCCTTGCCAGTGGTCGCCGTCGCACTGGTTATTTCCGCTAAAGCTTATTCACCAATCAATGC
GGAGTTGGCAAAGCAAATTGCACAGGCCTATCAAGGCTACTTGGAATAA

Upstream 100 bases:

>100_bases
TTATCAATATAGGCGCTTGTACTTTGCATGACTAACGAATAGATTTGATGTCATCTATCAGCAAAACGAATAGATAGACT
GATCTCTGATAGGAAATATT

Downstream 100 bases:

>100_bases
GGTTTCACGTGAAACATTCGATTTGATAATGCAGCCTTAAGTCTAGGGACATATAGTAAAGCTGCGCGTAATACATAATG
TGACCACTAGTATATGAACT

Product: transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MEIEALRSFVAFVDTGSFTRAAMQTYKTQSAVSMQMKRLEQELGKTLFVKEGRNLVLSTEGQRFGLYAKQLLQLHDETVT
TIKQTQVGAQLHLGCPDDYAESVLPRIVALLHGHIKQLDLQITCASSQKLRIMLDSGQLDAAIVTRLPESDEGYLLQTSK
GVWVSASGSNLSDADPLPIALFQKDCKFHIAALDGLMKQDRHYQLLACSSSAAALNAIVAKNLAISAMAECSVSAPLNII
DSGTLPPLPVVAVALVISAKAYSPINAELAKQIAQAYQGYLE

Sequences:

>Translated_282_residues
MEIEALRSFVAFVDTGSFTRAAMQTYKTQSAVSMQMKRLEQELGKTLFVKEGRNLVLSTEGQRFGLYAKQLLQLHDETVT
TIKQTQVGAQLHLGCPDDYAESVLPRIVALLHGHIKQLDLQITCASSQKLRIMLDSGQLDAAIVTRLPESDEGYLLQTSK
GVWVSASGSNLSDADPLPIALFQKDCKFHIAALDGLMKQDRHYQLLACSSSAAALNAIVAKNLAISAMAECSVSAPLNII
DSGTLPPLPVVAVALVISAKAYSPINAELAKQIAQAYQGYLE
>Mature_282_residues
MEIEALRSFVAFVDTGSFTRAAMQTYKTQSAVSMQMKRLEQELGKTLFVKEGRNLVLSTEGQRFGLYAKQLLQLHDETVT
TIKQTQVGAQLHLGCPDDYAESVLPRIVALLHGHIKQLDLQITCASSQKLRIMLDSGQLDAAIVTRLPESDEGYLLQTSK
GVWVSASGSNLSDADPLPIALFQKDCKFHIAALDGLMKQDRHYQLLACSSSAAALNAIVAKNLAISAMAECSVSAPLNII
DSGTLPPLPVVAVALVISAKAYSPINAELAKQIAQAYQGYLE

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=283, Percent_Identity=31.8021201413428, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787806, Length=254, Percent_Identity=23.2283464566929, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=156, Percent_Identity=30.1282051282051, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=154, Percent_Identity=29.2207792207792, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=155, Percent_Identity=27.0967741935484, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30506; Mature: 30506

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIEALRSFVAFVDTGSFTRAAMQTYKTQSAVSMQMKRLEQELGKTLFVKEGRNLVLSTE
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECC
GQRFGLYAKQLLQLHDETVTTIKQTQVGAQLHLGCPDDYAESVLPRIVALLHGHIKQLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHEEE
QITCASSQKLRIMLDSGQLDAAIVTRLPESDEGYLLQTSKGVWVSASGSNLSDADPLPIA
EEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCE
LFQKDCKFHIAALDGLMKQDRHYQLLACSSSAAALNAIVAKNLAISAMAECSVSAPLNII
EEHHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
DSGTLPPLPVVAVALVISAKAYSPINAELAKQIAQAYQGYLE
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIEALRSFVAFVDTGSFTRAAMQTYKTQSAVSMQMKRLEQELGKTLFVKEGRNLVLSTE
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECC
GQRFGLYAKQLLQLHDETVTTIKQTQVGAQLHLGCPDDYAESVLPRIVALLHGHIKQLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHEEE
QITCASSQKLRIMLDSGQLDAAIVTRLPESDEGYLLQTSKGVWVSASGSNLSDADPLPIA
EEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCE
LFQKDCKFHIAALDGLMKQDRHYQLLACSSSAAALNAIVAKNLAISAMAECSVSAPLNII
EEHHCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
DSGTLPPLPVVAVALVISAKAYSPINAELAKQIAQAYQGYLE
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]