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The map label for this gene is oxaA [H]

Identifier: 117918465

GI number: 117918465

Start: 6841

End: 8466

Strand: Reverse

Name: oxaA [H]

Synonym: Shewana3_0006

Alternate gene names: 117918465

Gene position: 8466-6841 (Counterclockwise)

Preceding gene: 117918466

Following gene: 117918464

Centisome position: 0.17

GC content: 45.57

Gene sequence:

>1626_bases
ATGGAATCTCAACGCAATATATTGCTAATAGGACTACTGTTTGTCAGCTTTTTGCTGTGGCAACAGTGGCAAGCAGACAA
AGCTCCAAAACCCGTTGCAACCGAATCGTCTGTAGTGGCGAATGCAACCACAAATCACAGTGCTGATGTTCCAGAAGCAG
ACACAAGTGTCCCAGCAGCCTTAACGGCAACGCAAAATCTGATCACAGTTAAAACCGATCAGCTCGATGTACAAATCAAC
CCAGTGGGTGGTGACATCGTTTTTGCAGCTCTGGTTTCACACAAACTGGAACAGGGTAAAGACCAGCCATTTGTTTTGCT
TGAGCAAACCAAAGATTTCACCTATATCGCTCAGAGTGGCCTGATTGGCCGTGATGGTATCGATAGCAGTGCTAAAGGTC
GCGCCGCATTTGCTGCCAACAAAACTGAATTCACCTTAGCCGATGGCCAAGACACCTTAGAAGTACCACTGACCTATGTG
GCTGATAACGGTGTGACTTACACCAAAGTGTTTGTCTTCCATCGTGGCAAGTTTAACGTTGATATCGATTACAAAATCAA
CAACACTTCAGCTGCTCCATTACAAGTTCAGATGTACGGTCAGATTAAACAGACCATCAAGCCATCTGAAAGCAGCATGA
TGATGCCAACTTACCGTGGCGCCGCGTTCTCGACTCAAGATGTACGTTACGAAAAGTACAAGTTTGAAGATATGAGCAAG
AGCAACCTCAATCAACCGACTCTCGGTGGTTGGGCGGCGATGTTGCAACATTACTTCGTATCTGCTTGGATCCCACCAGC
AACCGACAGCAACACCATTTTCTCGAGTGTCAGTGCAGGCGGTTTAGCTAACATAGGTTTCCGTGGCGCGGTATACGATA
TTGCACCGGGTGCGACTCAAGAAATTAGCTCACAATTTTATGTTGGTCCTAAGGATCAAAAAGCGCTATCTGCGTTATCT
GATACCTTAAACCTAGTTGTTGATTACGGTTTCCTTTGGTGGTTAGCCGTGCCAATCCACTGGTTATTGATGTTCTATCA
ATCCTTTGTGGGTAACTGGGGTGTGGCAATTATCCTGATCACCTTAACCGTTCGTGGTTTACTGTTCCCGCTCACTAAAG
CGCAGTACACCTCAATGGCGAAGATGCGTAACCTACAGCCAAAACTGCAGGATCTAAAAGAACGCTTCGGCGATGACCGT
CAAAAGATGGGTCAAGCCATGATGGAACTGTACAAGAAGGAAAAAGTGAACCCTATGGGTGGCTGTTTACCTATCCTATT
ACAGATGCCAATTTTCATTGCCTTGTACTGGGTATTGTTAGAAAGCTTCGAGCTGCGTCACGCGCCATTTATGTTATGGA
TCCACGACTTATCTGTACAAGATCCATACTACATTCTGCCGCTGTTGATGGGTGCGTCTATGTTTGTGATGCAAAAAATG
CAACCCATCGCACCGACCATGGACCCAATGCAAGTGAAGATGATGCAATGGATGCCAATGATCTTTACAGTATTCTTCCT
GTGGTTCCCATCGGGTCTGGTACTGTACTGGTTAGTGGGTAACATTGTTGCCATCATCCAGCAGAAGATTATTTATGCAG
GTCTAGAGAAAAAAGGCTTAAAATAA

Upstream 100 bases:

>100_bases
TTGTTGGTTTGCATTGAAACGCATATTAAAATGTCACCCTTTGCATCCCGGCGGTAGTGATCCCGTCCCCCCTAAAAATG
ACAGGTGTAATAAATAGGCT

Downstream 100 bases:

>100_bases
CCCCAAGCGCTAGATAAGAGCTAACGGCTCAGCATATGCAAAAAGGCGGCTTAATGAGCCGCCTTTTCCTTTAGATGATT
TGATCGAATTAATGGGTATT

Product: protein translocase subunit yidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAALTATQNLITVKTDQLDVQIN
PVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSGLIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYV
ADNGVTYTKVFVFHRGKFNVDIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK
SNLNQPTLGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGATQEISSQFYVGPKDQKALSALS
DTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDR
QKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQKM
QPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKGLK

Sequences:

>Translated_541_residues
MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAALTATQNLITVKTDQLDVQIN
PVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSGLIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYV
ADNGVTYTKVFVFHRGKFNVDIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK
SNLNQPTLGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGATQEISSQFYVGPKDQKALSALS
DTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDR
QKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQKM
QPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKGLK
>Mature_541_residues
MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAALTATQNLITVKTDQLDVQIN
PVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSGLIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYV
ADNGVTYTKVFVFHRGKFNVDIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK
SNLNQPTLGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGATQEISSQFYVGPKDQKALSALS
DTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDR
QKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQKM
QPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKGLK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI223718097, Length=194, Percent_Identity=28.3505154639175, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI1790140, Length=548, Percent_Identity=51.4598540145985, Blast_Score=560, Evalue=1e-160,
Organism=Drosophila melanogaster, GI24662345, Length=198, Percent_Identity=26.2626262626263, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21356443, Length=198, Percent_Identity=26.2626262626263, Blast_Score=83, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 60616; Mature: 60616

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAA
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
LTATQNLITVKTDQLDVQINPVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG
EECCCCEEEEEECEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHCC
LIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYVADNGVTYTKVFVFHRGKFNV
CCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEECCEEEEECCCCEEEEEEEEECCEEEE
DIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK
EEEEEECCCCCCCEEEEEHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCC
SNLNQPTLGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGATQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHH
EISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILI
HHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPMG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
GCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQKM
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
QPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
K
C
>Mature Secondary Structure
MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAA
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
LTATQNLITVKTDQLDVQINPVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG
EECCCCEEEEEECEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHCC
LIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYVADNGVTYTKVFVFHRGKFNV
CCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEECCEEEEECCCCEEEEEEEEECCEEEE
DIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK
EEEEEECCCCCCCEEEEEHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCC
SNLNQPTLGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGATQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHH
EISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILI
HHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPMG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
GCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQKM
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
QPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA