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The map label for this gene is yeeY [H]

Identifier: 117676327

GI number: 117676327

Start: 276877

End: 277758

Strand: Reverse

Name: yeeY [H]

Synonym: Shewana3_4390

Alternate gene names: 117676327

Gene position: 277758-276877 (Counterclockwise)

Preceding gene: NA

Following gene: 117676325

Centisome position: 99.58

GC content: 50.57

Gene sequence:

>882_bases
ATGAATCCGACACTGGGATCTCTCAAGATATTGATAGCGGCGGCTGAAACGGGCTCCTTTTCGGCGGCTGCACGCAAATT
AGGCAAGGCGCAATCAGTGGTTAGCACCACCATTTCCAATCTGGAGATCGACCTTGATCTGACGTTGTTCGAACGAACAG
GTCGTTATCCACAACTGACACAAGCAGGTGTACGGATAGTACAGGAGGCAGAGGTCTTGCTCGCCCAGAGTCAACGCTTA
CAGGCGATTGCAGGTGAGTTGGCTTCTGGTGTTGAGACACGCCTGACTCTTGCTATCGATGATGACTCTCACTTGCCATG
GCTCGGCAGTTTGCTGGAGCATTTTGCCACTCGTTTTCCAATGGTAGAGCTGGAGTTGCTTTTTCCATTGATGGAAGATG
TCACTGATTTACTACTAACTGGCCGTGCTCAGCTTGGTATATGTTATAAAAACGAGAATCCCCATCGCGAGATTGTCACT
TACACACTGGGTGAAGTAGCTATGCCGATAGTGGTTTCTACAGAACATCCGCTGGCTCGAAAGCAGCCACTGAATGAGAT
CGACTTGCAAGGCTCACGACAGTTGCTGGTTACTGGACGGCGGGAGGGAAGCGAACGTCAGCGCTTTCGGCTCTCTGCGC
AAGTGTGGTGGGTAGAAGGAGACCTTGGGGTGATGGAATTCGTGAAACGGGGTTTGGGTTGGGCAGCAATTCCTGCTTTT
TTAATCCAAGAGGCGCTGGCACGTCAAGAAGTTGTGGTACTGGAATCGGACTTAATAAGCCGTCATGCCCTGACGTTAGA
ACTACAATGGCACCGCGCTTTAGCACTTGGACAAGCTGGTCGATGGCTCAAAGAAACCCTTCAGTCAAAAGTGCCTTTTT
GA

Upstream 100 bases:

>100_bases
AAGTGAAGCCAATGTACCTCTATTTACTGATACGAACATGTTAGTATCTATCGTTGAAACAGATAGATTGAGTCTGGACA
GTTTTAATACCGAGAAATAA

Downstream 100 bases:

>100_bases
AAGCTACAATGGGTTTTTAGTATTGCCCCAAAGCGATTTAGCCGCCTTCAAAAAGTCATAATAAATAATCGTTGATTGAC
CAAATTTTAGTAATCTGAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNPTLGSLKILIAAAETGSFSAAARKLGKAQSVVSTTISNLEIDLDLTLFERTGRYPQLTQAGVRIVQEAEVLLAQSQRL
QAIAGELASGVETRLTLAIDDDSHLPWLGSLLEHFATRFPMVELELLFPLMEDVTDLLLTGRAQLGICYKNENPHREIVT
YTLGEVAMPIVVSTEHPLARKQPLNEIDLQGSRQLLVTGRREGSERQRFRLSAQVWWVEGDLGVMEFVKRGLGWAAIPAF
LIQEALARQEVVVLESDLISRHALTLELQWHRALALGQAGRWLKETLQSKVPF

Sequences:

>Translated_293_residues
MNPTLGSLKILIAAAETGSFSAAARKLGKAQSVVSTTISNLEIDLDLTLFERTGRYPQLTQAGVRIVQEAEVLLAQSQRL
QAIAGELASGVETRLTLAIDDDSHLPWLGSLLEHFATRFPMVELELLFPLMEDVTDLLLTGRAQLGICYKNENPHREIVT
YTLGEVAMPIVVSTEHPLARKQPLNEIDLQGSRQLLVTGRREGSERQRFRLSAQVWWVEGDLGVMEFVKRGLGWAAIPAF
LIQEALARQEVVVLESDLISRHALTLELQWHRALALGQAGRWLKETLQSKVPF
>Mature_293_residues
MNPTLGSLKILIAAAETGSFSAAARKLGKAQSVVSTTISNLEIDLDLTLFERTGRYPQLTQAGVRIVQEAEVLLAQSQRL
QAIAGELASGVETRLTLAIDDDSHLPWLGSLLEHFATRFPMVELELLFPLMEDVTDLLLTGRAQLGICYKNENPHREIVT
YTLGEVAMPIVVSTEHPLARKQPLNEIDLQGSRQLLVTGRREGSERQRFRLSAQVWWVEGDLGVMEFVKRGLGWAAIPAF
LIQEALARQEVVVLESDLISRHALTLELQWHRALALGQAGRWLKETLQSKVPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=254, Percent_Identity=27.5590551181102, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789492, Length=290, Percent_Identity=26.551724137931, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786508, Length=291, Percent_Identity=24.0549828178694, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787949, Length=174, Percent_Identity=31.6091954022989, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=29.6875, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=256, Percent_Identity=26.5625, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=251, Percent_Identity=27.8884462151394, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=254, Percent_Identity=24.0157480314961, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=36.0902255639098, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI157672245, Length=173, Percent_Identity=29.4797687861272, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32577; Mature: 32577

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTLGSLKILIAAAETGSFSAAARKLGKAQSVVSTTISNLEIDLDLTLFERTGRYPQLT
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCCCHH
QAGVRIVQEAEVLLAQSQRLQAIAGELASGVETRLTLAIDDDSHLPWLGSLLEHFATRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCC
MVELELLFPLMEDVTDLLLTGRAQLGICYKNENPHREIVTYTLGEVAMPIVVSTEHPLAR
CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEEEHHHHHEEEEEECCCCCHH
KQPLNEIDLQGSRQLLVTGRREGSERQRFRLSAQVWWVEGDLGVMEFVKRGLGWAAIPAF
HCCCCCCCCCCCCEEEEECCCCCCHHHHEEEEEEEEEEECCCHHHHHHHHCCCHHHHHHH
LIQEALARQEVVVLESDLISRHALTLELQWHRALALGQAGRWLKETLQSKVPF
HHHHHHHHHHEEEEHHHHHCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNPTLGSLKILIAAAETGSFSAAARKLGKAQSVVSTTISNLEIDLDLTLFERTGRYPQLT
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCCCHH
QAGVRIVQEAEVLLAQSQRLQAIAGELASGVETRLTLAIDDDSHLPWLGSLLEHFATRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCC
MVELELLFPLMEDVTDLLLTGRAQLGICYKNENPHREIVTYTLGEVAMPIVVSTEHPLAR
CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEEEHHHHHEEEEEECCCCCHH
KQPLNEIDLQGSRQLLVTGRREGSERQRFRLSAQVWWVEGDLGVMEFVKRGLGWAAIPAF
HCCCCCCCCCCCCEEEEECCCCCCHHHHEEEEEEEEEEECCCHHHHHHHHCCCHHHHHHH
LIQEALARQEVVVLESDLISRHALTLELQWHRALALGQAGRWLKETLQSKVPF
HHHHHHHHHHEEEEHHHHHCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]