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The map label for this gene is 117676325

Identifier: 117676325

GI number: 117676325

Start: 275930

End: 276307

Strand: Reverse

Name: 117676325

Synonym: Shewana3_4388

Alternate gene names: NA

Gene position: 276307-275930 (Counterclockwise)

Preceding gene: 117676327

Following gene: 117676324

Centisome position: 99.06

GC content: 41.53

Gene sequence:

>378_bases
ATGCAGTTAGGTGAACTAGAAAAACAGGTTTTGCAGCATCTGTGGACAGAATCTGAAGCTGATGCAAAGCAAGTACATGC
TGTGCTTGGTGTCTCTAGAGGGAACTCTCTTAATACCATTCAGAGCACTTTAGAACGCTTATTTAAAAAAGGATTGCTGA
GTCGAACCAAGCAAGGACATGCCTATTTTTACAGGGCAAAAGTGGACCGAGAAGCGTTGATCGCTACACTTATTACCAAT
ATCACTAGCGACTTTGTCGAAGAAGGTGAGCATAGTCTCATTGCGGCATTTAGTTCCGCATCAGCTAATCTGAATGATGC
CCAACTCGATATGCTAGAACATTTAATTGAAGAACAACGTAAACTTCGGAAAGGATAA

Upstream 100 bases:

>100_bases
TTAACCAGCCCATAGTGTCCTCTCCTTGAATAGAAAAACCGATTGCCTATCGGTTTTTATTCTGTCACTATATCGTTCAT
TATGGAAAGAGAAAAGTGTT

Downstream 100 bases:

>100_bases
TTAGGGTTATGTTTGTTGGCGATTTAGCGATAGCACTAAATTTATTGAGTGTTGCAGTGCTGGCATTTGCTATCAGTGTT
GCGTGCATCTCGATCGCCCT

Product: transcriptional regulator, TrmB

Products: NA

Alternate protein names: Transcriptional Repressor CopY Family Protein; Transcriptional Repressor CopY Family; Transcriptional Regulator; CopY Family Transcriptional Regulator; Transcriptional Regulator BlaI/MecI/CopY Family; Transcriptional Regulator TrmB

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MQLGELEKQVLQHLWTESEADAKQVHAVLGVSRGNSLNTIQSTLERLFKKGLLSRTKQGHAYFYRAKVDREALIATLITN
ITSDFVEEGEHSLIAAFSSASANLNDAQLDMLEHLIEEQRKLRKG

Sequences:

>Translated_125_residues
MQLGELEKQVLQHLWTESEADAKQVHAVLGVSRGNSLNTIQSTLERLFKKGLLSRTKQGHAYFYRAKVDREALIATLITN
ITSDFVEEGEHSLIAAFSSASANLNDAQLDMLEHLIEEQRKLRKG
>Mature_125_residues
MQLGELEKQVLQHLWTESEADAKQVHAVLGVSRGNSLNTIQSTLERLFKKGLLSRTKQGHAYFYRAKVDREALIATLITN
ITSDFVEEGEHSLIAAFSSASANLNDAQLDMLEHLIEEQRKLRKG

Specific function: Unknown

COG id: COG3682

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14048; Mature: 14048

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGELEKQVLQHLWTESEADAKQVHAVLGVSRGNSLNTIQSTLERLFKKGLLSRTKQGH
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
AYFYRAKVDREALIATLITNITSDFVEEGEHSLIAAFSSASANLNDAQLDMLEHLIEEQR
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KLRKG
HHCCC
>Mature Secondary Structure
MQLGELEKQVLQHLWTESEADAKQVHAVLGVSRGNSLNTIQSTLERLFKKGLLSRTKQGH
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
AYFYRAKVDREALIATLITNITSDFVEEGEHSLIAAFSSASANLNDAQLDMLEHLIEEQR
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KLRKG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA