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The map label for this gene is 117676288

Identifier: 117676288

GI number: 117676288

Start: 235902

End: 236840

Strand: Reverse

Name: 117676288

Synonym: Shewana3_4351

Alternate gene names: NA

Gene position: 236840-235902 (Counterclockwise)

Preceding gene: 117676289

Following gene: 117676287

Centisome position: 84.91

GC content: 41.53

Gene sequence:

>939_bases
ATGACTTTTAAGATTTTAAGCATTGATGGCGGTGGAATACGAGGGGTTTACCCTGCGCACATACTTAAATGTTTCGAAGA
AAAACTCGGAATCAATCTCTTAGAGTCATTCGACATGATAGCTGGCACTAGTACGGGTTCCATAATAGCGGCTGGTGTTG
CCTGCGACATCCGCGCAACCGAAATAGTTAACATGTACAAAGAACATGGCGAAGATATTTTCAAAAAGAAAAAGTCGAGA
ATACCTTTTAAGAAGCTTCGAAACATTACGCAACCGTTGCTTGAAAGCGTCTATGACTGTGGCAGTTTATATAAAGTTCT
TAAAGGTGTTTTCAACGATAGTACGCTTGGGCAAATTGCCAAGCCTCTGATTCTACCTGCAACGGATGTTGGTAACGGCG
GAGTTCATGTATTTAAATCGGCTTATGACCCAACGTTTAATCGCGATAGGTTGGTCAAAGTCAGAGATGCTGTTCTAGCA
TCTTGCTCAGCCCCAACATATTTTGACCCTCATAAAGTTGATGAGTACTTGTTATCAGATGGTGGTCTGTGGGCAAACAA
CCCAGCATTAGTGGCTGTTATCGATGCCCAAAAACGACTGGGGATAAATTACGATGATATACAAGTGGTATCCATCGGCA
CCGGTCATTCCAAAGTCGCCTATGGTTTAAAGCACAAGGGAGACTGGGGTCTTGCAACGGGCTGGAGGCATAAAGAATTT
ATAAGTTTCATGCTATCGCTTCAGAGCCAAAGCGCGTTGAATTATCTAAAGCTTCATTTGAAGCCTGAGCAAATATTAAG
AATTGATTTTGAGTCAGATACTGATCTGCCACTCGATGACGTTTCTGAAATCGATAATTTGATCAGTTTAGCCGACAAGA
ATTTTACATATGGAAGTAAAGAGATTAGCAACTTTGTCTTAGGAGGAAATGTATCGTGA

Upstream 100 bases:

>100_bases
ATCTATCAATACCTCAATGAGTAGCCATCGTTAGAAGAGCCACTCTGTAGCATTACTAAAATTTGGTCAACTGGCGGTTT
ACAGAGGAGTAAGGATACAT

Downstream 100 bases:

>100_bases
CTCAAATAGTTTCTAGGGAAGAGGCCCTATTAACAGCGGCGAAAAAGTTGGATATTTCACCGACTAAATATAAGCAAGCG
ATTGATCGCTTTAATTCAAT

Product: patatin

Products: NA

Alternate protein names: Patatin Family Protein; Patatin-Like Phospholipase; Phospholipase Patatin Family; Patatin-Related Protein; Patatin-Like Protein; Patatin-Like Phospholipase Family; Patatin Family Phospholipase; Phospholipase

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTFKILSIDGGGIRGVYPAHILKCFEEKLGINLLESFDMIAGTSTGSIIAAGVACDIRATEIVNMYKEHGEDIFKKKKSR
IPFKKLRNITQPLLESVYDCGSLYKVLKGVFNDSTLGQIAKPLILPATDVGNGGVHVFKSAYDPTFNRDRLVKVRDAVLA
SCSAPTYFDPHKVDEYLLSDGGLWANNPALVAVIDAQKRLGINYDDIQVVSIGTGHSKVAYGLKHKGDWGLATGWRHKEF
ISFMLSLQSQSALNYLKLHLKPEQILRIDFESDTDLPLDDVSEIDNLISLADKNFTYGSKEISNFVLGGNVS

Sequences:

>Translated_312_residues
MTFKILSIDGGGIRGVYPAHILKCFEEKLGINLLESFDMIAGTSTGSIIAAGVACDIRATEIVNMYKEHGEDIFKKKKSR
IPFKKLRNITQPLLESVYDCGSLYKVLKGVFNDSTLGQIAKPLILPATDVGNGGVHVFKSAYDPTFNRDRLVKVRDAVLA
SCSAPTYFDPHKVDEYLLSDGGLWANNPALVAVIDAQKRLGINYDDIQVVSIGTGHSKVAYGLKHKGDWGLATGWRHKEF
ISFMLSLQSQSALNYLKLHLKPEQILRIDFESDTDLPLDDVSEIDNLISLADKNFTYGSKEISNFVLGGNVS
>Mature_311_residues
TFKILSIDGGGIRGVYPAHILKCFEEKLGINLLESFDMIAGTSTGSIIAAGVACDIRATEIVNMYKEHGEDIFKKKKSRI
PFKKLRNITQPLLESVYDCGSLYKVLKGVFNDSTLGQIAKPLILPATDVGNGGVHVFKSAYDPTFNRDRLVKVRDAVLAS
CSAPTYFDPHKVDEYLLSDGGLWANNPALVAVIDAQKRLGINYDDIQVVSIGTGHSKVAYGLKHKGDWGLATGWRHKEFI
SFMLSLQSQSALNYLKLHLKPEQILRIDFESDTDLPLDDVSEIDNLISLADKNFTYGSKEISNFVLGGNVS

Specific function: Unknown

COG id: COG3621

COG function: function code R; Patatin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI52486194, Length=244, Percent_Identity=27.4590163934426, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI52486251, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544092, Length=228, Percent_Identity=32.4561403508772, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551040, Length=226, Percent_Identity=31.858407079646, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567809, Length=227, Percent_Identity=31.2775330396476, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34361; Mature: 34230

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKILSIDGGGIRGVYPAHILKCFEEKLGINLLESFDMIAGTSTGSIIAAGVACDIRAT
CEEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECEEECCHHH
EIVNMYKEHGEDIFKKKKSRIPFKKLRNITQPLLESVYDCGSLYKVLKGVFNDSTLGQIA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KPLILPATDVGNGGVHVFKSAYDPTFNRDRLVKVRDAVLASCSAPTYFDPHKVDEYLLSD
CCCEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
GGLWANNPALVAVIDAQKRLGINYDDIQVVSIGTGHSKVAYGLKHKGDWGLATGWRHKEF
CCEEECCCCEEEEEECHHHCCCCCCCEEEEEECCCCCHHEECCCCCCCCCCCCCCCHHHH
ISFMLSLQSQSALNYLKLHLKPEQILRIDFESDTDLPLDDVSEIDNLISLADKNFTYGSK
HHHHHHHHHHHHHHHHHEEECHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
EISNFVLGGNVS
HHHCEEECCCCC
>Mature Secondary Structure 
TFKILSIDGGGIRGVYPAHILKCFEEKLGINLLESFDMIAGTSTGSIIAAGVACDIRAT
EEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECEEECCHHH
EIVNMYKEHGEDIFKKKKSRIPFKKLRNITQPLLESVYDCGSLYKVLKGVFNDSTLGQIA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KPLILPATDVGNGGVHVFKSAYDPTFNRDRLVKVRDAVLASCSAPTYFDPHKVDEYLLSD
CCCEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
GGLWANNPALVAVIDAQKRLGINYDDIQVVSIGTGHSKVAYGLKHKGDWGLATGWRHKEF
CCEEECCCCEEEEEECHHHCCCCCCCEEEEEECCCCCHHEECCCCCCCCCCCCCCCHHHH
ISFMLSLQSQSALNYLKLHLKPEQILRIDFESDTDLPLDDVSEIDNLISLADKNFTYGSK
HHHHHHHHHHHHHHHHHEEECHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
EISNFVLGGNVS
HHHCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA