| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
Click here to switch to the map view.
The map label for this gene is 117621631
Identifier: 117621631
GI number: 117621631
Start: 45371
End: 46345
Strand: Reverse
Name: 117621631
Synonym: BAPKO_2060
Alternate gene names: NA
Gene position: 46345-45371 (Counterclockwise)
Preceding gene: 117621632
Following gene: 117621629
Centisome position: 77.3
GC content: 28.41
Gene sequence:
>975_bases TTGAAAAATAATAAATTAATTGCAATTTTTTTATTGCATATATTAACTGTGCTAATTTTGCTTTCTTGCTCGCTAGAAGT CAACAAAGATGATAATAAAGAGAAAGAAAATAAAAAAGCAAAAATAATTAAAAATAAAAAAAACTCATTAAACATTAAAA AAACGTCTCGAAACGCTAAAAATGGAAAACCAACAGTAGATAATCTATTTACAGCAATTAACGCTTTAAAAAACCCACCA AAAATCGCAGCTGGCAATATTAAAAACAAAGCAAATCCAGCAGCCTTAAAGCAGCCTAACAATGCAAATGCTAATGTTAA TATTCCAAAACAAATAGTAGATCCTGAGGCTAAAGAGTTAATACAAAAAATATTAGACAGATCTGAGAATATTGTTCAAA TAGGCGAAATTGATTCTAACAAAGGCGAACCTGATGACCAATTTGGAATGAAAGCAGAAATATTTAGTAAAATATTTTTC AATGCAGGTTCAACAGTACATTTTGACGAAAACGAATATCTAAATGAAAGAAGAATGCTTTACACATCTTTAAATTTCAA CGAAAGCACAATTTTAAATCTTGGAAAGATTTTATCAAAACTAAGCCAAAATTCAAACTACCGAAGCTTAGTTAAAGAAA CTCTTATAAACAGAGGCTTTAGTATTCAATTAGCAATGGAAGAAATCAGCTTGAAAGTATTGAATGTAAAAGACAAAATC CAACATCTAAACAAACCTGATTTGAAAACACTCTACTATGATTTTAACAAACTTGAAAAACTTAAAGAAAAATGGCTAAA AGATGTAGATGACATTATTAAAGACTACAATGCTAATCCCGAATTACGAACTGACATTTCAAAATTACATGACAATGTGG AACTAAAAAATTCAAAAGCGCTATTCGCAGATACTCACGATATAATTTTAAATTTAATTAACACAACCACCAATATTCTT ACTCCAATTCAGTAA
Upstream 100 bases:
>100_bases TTTTTTGCACAATAGCAATTTTGAATTAAAGTTATTAATTGGGTAATTAAAATTTTTAATTAATAATAATTACTTAAAAT TTTTATTAAAGGATAACATT
Downstream 100 bases:
>100_bases TATTGGTTTGCGATCCAAAATGAGAAAGAGACTCTTTGGGTCTCTTTCTTTTTTTATATTTAATTTTTTTAAAAACTTTT CTATTATTAATGATAATACA
Product: antigen, P35
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MKNNKLIAIFLLHILTVLILLSCSLEVNKDDNKEKENKKAKIIKNKKNSLNIKKTSRNAKNGKPTVDNLFTAINALKNPP KIAAGNIKNKANPAALKQPNNANANVNIPKQIVDPEAKELIQKILDRSENIVQIGEIDSNKGEPDDQFGMKAEIFSKIFF NAGSTVHFDENEYLNERRMLYTSLNFNESTILNLGKILSKLSQNSNYRSLVKETLINRGFSIQLAMEEISLKVLNVKDKI QHLNKPDLKTLYYDFNKLEKLKEKWLKDVDDIIKDYNANPELRTDISKLHDNVELKNSKALFADTHDIILNLINTTTNIL TPIQ
Sequences:
>Translated_324_residues MKNNKLIAIFLLHILTVLILLSCSLEVNKDDNKEKENKKAKIIKNKKNSLNIKKTSRNAKNGKPTVDNLFTAINALKNPP KIAAGNIKNKANPAALKQPNNANANVNIPKQIVDPEAKELIQKILDRSENIVQIGEIDSNKGEPDDQFGMKAEIFSKIFF NAGSTVHFDENEYLNERRMLYTSLNFNESTILNLGKILSKLSQNSNYRSLVKETLINRGFSIQLAMEEISLKVLNVKDKI QHLNKPDLKTLYYDFNKLEKLKEKWLKDVDDIIKDYNANPELRTDISKLHDNVELKNSKALFADTHDIILNLINTTTNIL TPIQ >Mature_324_residues MKNNKLIAIFLLHILTVLILLSCSLEVNKDDNKEKENKKAKIIKNKKNSLNIKKTSRNAKNGKPTVDNLFTAINALKNPP KIAAGNIKNKANPAALKQPNNANANVNIPKQIVDPEAKELIQKILDRSENIVQIGEIDSNKGEPDDQFGMKAEIFSKIFF NAGSTVHFDENEYLNERRMLYTSLNFNESTILNLGKILSKLSQNSNYRSLVKETLINRGFSIQLAMEEISLKVLNVKDKI QHLNKPDLKTLYYDFNKLEKLKEKWLKDVDDIIKDYNANPELRTDISKLHDNVELKNSKALFADTHDIILNLINTTTNIL TPIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36847; Mature: 36847
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNNKLIAIFLLHILTVLILLSCSLEVNKDDNKEKENKKAKIIKNKKNSLNIKKTSRNAK CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC NGKPTVDNLFTAINALKNPPKIAAGNIKNKANPAALKQPNNANANVNIPKQIVDPEAKEL CCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHH IQKILDRSENIVQIGEIDSNKGEPDDQFGMKAEIFSKIFFNAGSTVHFDENEYLNERRML HHHHHCCCCCEEEEECCCCCCCCCCHHHCHHHHHHHHHHHCCCCEEEECCHHHHCCHHEE YTSLNFNESTILNLGKILSKLSQNSNYRSLVKETLINRGFSIQLAMEEISLKVLNVKDKI EEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHEECHHHHH QHLNKPDLKTLYYDFNKLEKLKEKWLKDVDDIIKDYNANPELRTDISKLHDNVELKNSKA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEECCCCE LFADTHDIILNLINTTTNILTPIQ EEECHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKNNKLIAIFLLHILTVLILLSCSLEVNKDDNKEKENKKAKIIKNKKNSLNIKKTSRNAK CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC NGKPTVDNLFTAINALKNPPKIAAGNIKNKANPAALKQPNNANANVNIPKQIVDPEAKEL CCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHH IQKILDRSENIVQIGEIDSNKGEPDDQFGMKAEIFSKIFFNAGSTVHFDENEYLNERRML HHHHHCCCCCEEEEECCCCCCCCCCHHHCHHHHHHHHHHHCCCCEEEECCHHHHCCHHEE YTSLNFNESTILNLGKILSKLSQNSNYRSLVKETLINRGFSIQLAMEEISLKVLNVKDKI EEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHEECHHHHH QHLNKPDLKTLYYDFNKLEKLKEKWLKDVDDIIKDYNANPELRTDISKLHDNVELKNSKA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEECCCCE LFADTHDIILNLINTTTNILTPIQ EEECHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA