| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621599
Identifier: 117621599
GI number: 117621599
Start: 21235
End: 22587
Strand: Direct
Name: 117621599
Synonym: BAPKO_2028
Alternate gene names: NA
Gene position: 21235-22587 (Clockwise)
Preceding gene: 117621598
Following gene: 117621600
Centisome position: 35.42
GC content: 28.97
Gene sequence:
>1353_bases TTGAAATTTTCAAGATCTTTAATCTTTCTCAATCTTCAGAAAAAGTTTAAAAATAAATTTAATATCAATATTTTGGATTA TATTAAGCCAAGACCAATCAATATTGGTTTTAAAGATTTTGAAAACCAATATTTAACCACTAAGCAGAAAGAAGTGCTTT TTGACATAGAAAGTCATACTTATTCAAAAGTAATATTTAGTGGCGGGATTGCAAGTGGTAAGACATTTTTAGCCTCATAT TTGCTTATTAAAAAGCTTATTGAAAACAAATCTTTTTATGAGCAAGATACTAATAATTTTATTATAGGCAATTCTATTGG TTTGTTAATGACAAATACTATAAAGCAAATAGAAAAGATTTGCGGGCTATTAGGAATTGATTATCAGAAAAAGAAAAGCG GGCAATCTTTTTGTAAAATAGCAGGGCTTGAGCTTAATATTTATGGGGGTAAAAACAGAGATGCTTTTTCTAAGATTCGA GGGGGCAATAGTGCAATAATTTATGTAAATGAAGCAACAGTAATCCACAAAGAAACTTTGCTTGAGGTAATGAAAAGGCT TAGAAAGGGCAAATCAATTATTATTTTTGATACAAATCCCGAAAGCCCAGCACATTATTTTAAAACAGACTATATTGAAA ATACAGATGTTTTTAAAACATATAATTTTACAACGTATGACAACCCTTTAAATTCAGCAGATTTTATTGAAACCCAGGAG AAGCTTTACAAACATTTTCCTGCTTATAAGGCCCGAGTACTTTATGGAGAGTGGGTGTTAAATGAATCTTCATTGTTTAA TGAAATGATTTTTAACCAAGATTATGAATTTAAAAGTCCAATAATGTACATTGATCCTGCATTCTCAGTAGGTGGGGACA ATACAGCTGTTTGTGTTTTAGAACGCACTTTTGATAAGTTTTATGCATATATTTATCAAAGCCAAAAACCAATAAGTGAT AGCTTAATGCTTAGCTCTATTCAAGTTTTAATAGAAAATTTCAATGTAAATACGGTTTATATTGAGGAGAGAGATAGTAC CAAAGGGGATGGAATTTTGACCAAAACAATTCTTTTTCTAAGAAATAAGAGTTTTTGTTATTTTAGAGTTGCGCCAATAA AACCCTTGAGCAATAAGTTTAAAAGAATATGTGCTTTAATTCCTTTGTTTGAAAGCTGCAAAATAGAATTTTTAAAAATA GTAAGCAAAAATGTAATAGCTGATATTTACAGCTACAAAGGCGACGGCAAAACAAAAGATGATGCACTCGATTCTCTTGC AAATGCTTATCTTCTTTTAACATTAAATTATAAAGAAAAATTATTACATTTTGGAAAGTTTAAATATTTATAA
Upstream 100 bases:
>100_bases TGAAAAGGAGCTTATTAACATTTGCATGAGAGAAGATTATGATACCCTTGTTAAACTTAAATCTATTTTAAGTAGTAAGA ATTTAAAATTGGAGTAAAAT
Downstream 100 bases:
>100_bases TTTGATCTAAATTTTTAGTTATTAATTTAAGTTTGTAATTAACAACCATTTTAAAATTTTTTATTTTTCGTACTCTCTTT GATTAAAATTGGCTTTGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: PBSX Family Phage Terminase Large Subunit; Phage Terminase Large Subunit; Phage Terminase Large Subunit PBSX Family; Bsr Protein; Phage Terminase Large Subunit ATPase
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MKFSRSLIFLNLQKKFKNKFNINILDYIKPRPINIGFKDFENQYLTTKQKEVLFDIESHTYSKVIFSGGIASGKTFLASY LLIKKLIENKSFYEQDTNNFIIGNSIGLLMTNTIKQIEKICGLLGIDYQKKKSGQSFCKIAGLELNIYGGKNRDAFSKIR GGNSAIIYVNEATVIHKETLLEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQE KLYKHFPAYKARVLYGEWVLNESSLFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAVCVLERTFDKFYAYIYQSQKPISD SLMLSSIQVLIENFNVNTVYIEERDSTKGDGILTKTILFLRNKSFCYFRVAPIKPLSNKFKRICALIPLFESCKIEFLKI VSKNVIADIYSYKGDGKTKDDALDSLANAYLLLTLNYKEKLLHFGKFKYL
Sequences:
>Translated_450_residues MKFSRSLIFLNLQKKFKNKFNINILDYIKPRPINIGFKDFENQYLTTKQKEVLFDIESHTYSKVIFSGGIASGKTFLASY LLIKKLIENKSFYEQDTNNFIIGNSIGLLMTNTIKQIEKICGLLGIDYQKKKSGQSFCKIAGLELNIYGGKNRDAFSKIR GGNSAIIYVNEATVIHKETLLEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQE KLYKHFPAYKARVLYGEWVLNESSLFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAVCVLERTFDKFYAYIYQSQKPISD SLMLSSIQVLIENFNVNTVYIEERDSTKGDGILTKTILFLRNKSFCYFRVAPIKPLSNKFKRICALIPLFESCKIEFLKI VSKNVIADIYSYKGDGKTKDDALDSLANAYLLLTLNYKEKLLHFGKFKYL >Mature_450_residues MKFSRSLIFLNLQKKFKNKFNINILDYIKPRPINIGFKDFENQYLTTKQKEVLFDIESHTYSKVIFSGGIASGKTFLASY LLIKKLIENKSFYEQDTNNFIIGNSIGLLMTNTIKQIEKICGLLGIDYQKKKSGQSFCKIAGLELNIYGGKNRDAFSKIR GGNSAIIYVNEATVIHKETLLEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQE KLYKHFPAYKARVLYGEWVLNESSLFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAVCVLERTFDKFYAYIYQSQKPISD SLMLSSIQVLIENFNVNTVYIEERDSTKGDGILTKTILFLRNKSFCYFRVAPIKPLSNKFKRICALIPLFESCKIEFLKI VSKNVIADIYSYKGDGKTKDDALDSLANAYLLLTLNYKEKLLHFGKFKYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51964; Mature: 51964
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSRSLIFLNLQKKFKNKFNINILDYIKPRPINIGFKDFENQYLTTKQKEVLFDIESHT CCCCCEEEEEEEHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCC YSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTNNFIIGNSIGLLMTNTIKQIEKI EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCEEEECCCHHHHHHHHHHHHHH CGLLGIDYQKKKSGQSFCKIAGLELNIYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL HHHHCCCCHHHCCCCCEEEEECEEEEEECCCCCHHHHHHCCCCEEEEEEECCEEEHHHHH LEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQE HHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH KLYKHFPAYKARVLYGEWVLNESSLFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAVCVL HHHHHCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEE ERTFDKFYAYIYQSQKPISDSLMLSSIQVLIENFNVNTVYIEERDSTKGDGILTKTILFL EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH RNKSFCYFRVAPIKPLSNKFKRICALIPLFESCKIEFLKIVSKNVIADIYSYKGDGKTKD CCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DALDSLANAYLLLTLNYKEKLLHFGKFKYL HHHHHHCCEEEEEEECHHHHHHHHHCCCCC >Mature Secondary Structure MKFSRSLIFLNLQKKFKNKFNINILDYIKPRPINIGFKDFENQYLTTKQKEVLFDIESHT CCCCCEEEEEEEHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCC YSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTNNFIIGNSIGLLMTNTIKQIEKI EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCEEEECCCHHHHHHHHHHHHHH CGLLGIDYQKKKSGQSFCKIAGLELNIYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL HHHHCCCCHHHCCCCCEEEEECEEEEEECCCCCHHHHHHCCCCEEEEEEECCEEEHHHHH LEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQE HHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH KLYKHFPAYKARVLYGEWVLNESSLFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAVCVL HHHHHCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEE ERTFDKFYAYIYQSQKPISDSLMLSSIQVLIENFNVNTVYIEERDSTKGDGILTKTILFL EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH RNKSFCYFRVAPIKPLSNKFKRICALIPLFESCKIEFLKIVSKNVIADIYSYKGDGKTKD CCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DALDSLANAYLLLTLNYKEKLLHFGKFKYL HHHHHHCCEEEEEEECHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA