| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is 116873479
Identifier: 116873479
GI number: 116873479
Start: 2099340
End: 2100518
Strand: Direct
Name: 116873479
Synonym: lwe2063
Alternate gene names: NA
Gene position: 2099340-2100518 (Clockwise)
Preceding gene: 116873474
Following gene: 116873486
Centisome position: 74.6
GC content: 38.93
Gene sequence:
>1179_bases ATGAAAGCAACTGGAATTGTGGTCGAATATAACCCTTTTCATAATGGGCATCAGCTACATCTAAATAAGGCGCGCGAGTT AACCAAAGCAGATGTGGTGATTGCGGTAATGAGCGGCTCTTTTGTGCAACGCGGTGAACCAGCGATTTTGCCTAAATGGG AGCGAACAAAGATGGCACTCGCTGCTGGTGTTGATATGGTTGTTGAACTCCCTGTCTCGTTCGCAACACAACACGCGACT ATTTTTGCTGAAGAGTCTGTCCGTATTTTAGATGCGCTTCATGTGGATGCGTTATTTTTTGGAAGTGAACATGGAGTTAG CGAGGATTTTTTGACTGCTGCTAAAACAGTCGTCGAACACGAAGCAAGTTTTAATCAAGCCATTCAACTTGCATTAATCG ACAAAAAAACCTCCTATGCGAGAGCTTATACAGAAACTTTTAAACAGTCATTCGGTACAGAATTACTAGATGTCACTAAG CCAAATAATATTCTCGGTTTTCATTACGCACTCGCTATTCAAAAACAAAATCCTACCATCTCCCTTCAAACAATGGCGCG TATTCATGCAGGTTATCATGACATAGAAGCAAACCATGACCAAATTGCAAGTGCGACCGCGATTCGAAAGTTACTGTTGG CAGGAAATTTAGAGGAAGCTAGTCGTTATCTTCCTGCTTCTTCTATAGAAATTTTAAAAAATTATGATGGTCCTTTTTTA TCATGGGAAAATTATTGGGCGCTCCTAAAATATCGATTAATTCAAGCTGAAACGGATGAGCTTGAGGGGATTCGTAATGT TAGTGAAGGTATTCAAAATCGAATGCAAATTGCGGCAACAAAAGCGCAATATTTTTCCGACTTTATAGAATCTATGAAAA CAAAACGATATAGTAATGCGAGAATACAACGAACAGCTTTACAAATTTTATTAAATGCCAGAAACATTCCTTCCGCACCA TACATTCGCATTCTTGGTATGAATAAAACTGGTCAAAAGTATTTATCCCATCATAAAAAAAATATTTCTCTTCCAATAGT CACAACTGTTTCCAAAGCGGCTCCAGGACTTTTAGAAGAAGATTTACGCGCCACTAACATTTATACACTAGTAAAAGGAC TAGAAAACTACCAAGCTGGCGACTTCCATATTCCACCAATATTAAAGAGCCAGACATAA
Upstream 100 bases:
>100_bases ATTATAGCTTTTTTAAAGGCTTTTGTCAATGGTTTTTGGAGGACCAAAACTACGAGCTGTATTTTATGTTAAAATAGATT ATCTAAAGGAGTGAACCGAA
Downstream 100 bases:
>100_bases GTCTTGAAAAATAGAAACCAGAAGCAAAAATCGATTTGTACGATTTTTTGCTTCTGGTTTTTGGTTAAAAATAAACAAAG CTAAGTTCGTTTTTCAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMALAAGVDMVVELPVSFATQHAT IFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEHEASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTK PNNILGFHYALAIQKQNPTISLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFL SWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNARIQRTALQILLNARNIPSAP YIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEEDLRATNIYTLVKGLENYQAGDFHIPPILKSQT
Sequences:
>Translated_392_residues MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMALAAGVDMVVELPVSFATQHAT IFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEHEASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTK PNNILGFHYALAIQKQNPTISLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFL SWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNARIQRTALQILLNARNIPSAP YIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEEDLRATNIYTLVKGLENYQAGDFHIPPILKSQT >Mature_392_residues MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMALAAGVDMVVELPVSFATQHAT IFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEHEASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTK PNNILGFHYALAIQKQNPTISLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFL SWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNARIQRTALQILLNARNIPSAP YIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEEDLRATNIYTLVKGLENYQAGDFHIPPILKSQT
Specific function: Unknown
COG id: COG1323
COG function: function code R; Predicted nucleotidyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0348 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2063_LISW6 (A0AKE9)
Other databases:
- EMBL: AM263198 - RefSeq: YP_850260.1 - ProteinModelPortal: A0AKE9 - SMR: A0AKE9 - STRING: A0AKE9 - GeneID: 4466365 - GenomeReviews: AM263198_GR - KEGG: lwe:lwe2063 - NMPDR: fig|386043.6.peg.2008 - eggNOG: COG1323 - HOGENOM: HBG477465 - OMA: PNNILGF - ProtClustDB: PRK13670 - BioCyc: LWEL386043:LWE2063-MONOMER - HAMAP: MF_01539 - InterPro: IPR014729 - InterPro: IPR008513 - Gene3D: G3DSA:3.40.50.620
Pfam domain/function: PF05636 DUF795
EC number: NA
Molecular weight: Translated: 43824; Mature: 43824
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMAL CCCCEEEEEECCCCCCCEEEEHHHHHHHHHCEEEEEECCCHHHCCCCCCCCCHHHHHHHH AAGVDMVVELPVSFATQHATIFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEH HHCCCEEEECCHHHHCCCEEEEECCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHH EASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTKPNNILGFHYALAIQKQNPTI HHCHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEEEECCCCCE SLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFL EHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCCCEE SWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNA CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RIQRTALQILLNARNIPSAPYIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEE HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH DLRATNIYTLVKGLENYQAGDFHIPPILKSQT HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC >Mature Secondary Structure MKATGIVVEYNPFHNGHQLHLNKARELTKADVVIAVMSGSFVQRGEPAILPKWERTKMAL CCCCEEEEEECCCCCCCEEEEHHHHHHHHHCEEEEEECCCHHHCCCCCCCCCHHHHHHHH AAGVDMVVELPVSFATQHATIFAEESVRILDALHVDALFFGSEHGVSEDFLTAAKTVVEH HHCCCEEEECCHHHHCCCEEEEECCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHH EASFNQAIQLALIDKKTSYARAYTETFKQSFGTELLDVTKPNNILGFHYALAIQKQNPTI HHCHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEEEECCCCCE SLQTMARIHAGYHDIEANHDQIASATAIRKLLLAGNLEEASRYLPASSIEILKNYDGPFL EHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCCCEE SWENYWALLKYRLIQAETDELEGIRNVSEGIQNRMQIAATKAQYFSDFIESMKTKRYSNA CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RIQRTALQILLNARNIPSAPYIRILGMNKTGQKYLSHHKKNISLPIVTTVSKAAPGLLEE HHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH DLRATNIYTLVKGLENYQAGDFHIPPILKSQT HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA