Click here to switch to the map view.

The map label for this gene is fni

Identifier: 116872815

GI number: 116872815

Start: 1385694

End: 1386770

Strand: Direct

Name: fni

Synonym: lwe1399

Alternate gene names: 116872815

Gene position: 1385694-1386770 (Clockwise)

Preceding gene: 116872814

Following gene: 116872817

Centisome position: 49.24

GC content: 39.74

Gene sequence:

>1077_bases
ATGCAGAAGAATGATGACTTATTAAGAGAACGACGGAAAGATGAACATGTTGCTCTTGGAGTGAAACAAAATGAACAATT
AGCGCCATCTAGTTTAGATGATATTCAGCTGATTGGGACTTCTATTCCGCGTTATAATGTGAAAGATATTGATTTGACTA
CGACCATTTTTGGCGTAAATGTTTCTCTTCCATTTTATATTAATGCGATGACAGGGGGAAGTCGACATACGAAGAAAATC
AACGCCGACCTTGCTGAAATAGCGCGCGAAGTAGCTATCCCGATGGCCGTCGGTTCTCAGTCTGCAGCTCTAAAAAACAG
TTCCCTTATGGATACATACCAAATTGTTAGAGAAGTGAACCCAAGTGGTATAATTATGGCCAATGTTAGTCCTGAAGTGG
CTGTTCAAGACGGACTTCGTGCGATTGAAATGTTAGAAGCAAATGCACTGCAGATTCATATTAATCCGGCACAAGAATTA
GTTATGCAAGAAGGCGACCGCTCTTTTAGTCATTGGTTAGCAAGAATAGAGGAGTATGTAAAACGCTCACCAGTACCAAT
TATTGTAAAAGAAGTTGGCTTTGGAATGACGAGAGAGACTGTAAAGACACTAAGAGAAGTTGGGGTCGAAACAGTAGATT
TGGCTGGAAAAGGCGGAACCAATTTTGCTCAAATTGAAAACGATCGTCGCCGCGACCAAGCTTATGATTTTTTACTCGAT
TGGGGTATTTCAACGGGGCAATCATTAATAGATATGCAACACATAGATGCTCCTAAGATTGCTTATTTAGCATCTGGAGG
CATTAGAAATCCGCTAGACATTGTCAAATCTTTGGCGCTCGGAGCGGATAGTGTTGGCATGGCCGGACAAATTATTTATT
CATTAAAAAAAGATGGCGTATCAAATACCATCGAAAAACTTGAACTATGGAAAGAACAACTACGTGGCTTATTCGTCCTT
GCTGATGCAAAAAATATTGCCGAATTAAAAGAAACTTCTTTAATTGTAAACGGGAAACTTGCTGAGTGGGGAAATGTAAG
AGGAATTGATTTGGTACAACTTGCGAATAGAAAATAA

Upstream 100 bases:

>100_bases
ATATCAACCGACACCTGAAGAAAAAGAAACCATTTTTAAACATGTGTTAACTTTTTCTTAAGACGATATAGAAATTAGCG
ATTTTTTGGAGGATTACTAC

Downstream 100 bases:

>100_bases
AAACCAGCTGCTATGAAGTGCATTCCCAAACTTAGACCAAAAATCTAACTTTGAGGGCGCACTTCACTTTTTAGCAAAGC
TGGTTTTTTATTTATTGAAC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLDDIQLIGTSIPRYNVKDIDLTTTIFGVNVSLPFYINAMTGGSRHTKKI
NADLAEIAREVAIPMAVGSQSAALKNSSLMDTYQIVREVNPSGIIMANVSPEVAVQDGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLARIEEYVKRSPVPIIVKEVGFGMTRETVKTLREVGVETVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQSLIDMQHIDAPKIAYLASGGIRNPLDIVKSLALGADSVGMAGQIIYSLKKDGVSNTIEKLELWKEQLRGLFVL
ADAKNIAELKETSLIVNGKLAEWGNVRGIDLVQLANRK

Sequences:

>Translated_358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLDDIQLIGTSIPRYNVKDIDLTTTIFGVNVSLPFYINAMTGGSRHTKKI
NADLAEIAREVAIPMAVGSQSAALKNSSLMDTYQIVREVNPSGIIMANVSPEVAVQDGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLARIEEYVKRSPVPIIVKEVGFGMTRETVKTLREVGVETVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQSLIDMQHIDAPKIAYLASGGIRNPLDIVKSLALGADSVGMAGQIIYSLKKDGVSNTIEKLELWKEQLRGLFVL
ADAKNIAELKETSLIVNGKLAEWGNVRGIDLVQLANRK
>Mature_358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLDDIQLIGTSIPRYNVKDIDLTTTIFGVNVSLPFYINAMTGGSRHTKKI
NADLAEIAREVAIPMAVGSQSAALKNSSLMDTYQIVREVNPSGIIMANVSPEVAVQDGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLARIEEYVKRSPVPIIVKEVGFGMTRETVKTLREVGVETVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQSLIDMQHIDAPKIAYLASGGIRNPLDIVKSLALGADSVGMAGQIIYSLKKDGVSNTIEKLELWKEQLRGLFVL
ADAKNIAELKETSLIVNGKLAEWGNVRGIDLVQLANRK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_LISW6 (A0AII5)

Other databases:

- EMBL:   AM263198
- RefSeq:   YP_849596.1
- ProteinModelPortal:   A0AII5
- SMR:   A0AII5
- STRING:   A0AII5
- GeneID:   4465153
- GenomeReviews:   AM263198_GR
- KEGG:   lwe:lwe1399
- NMPDR:   fig|386043.6.peg.1354
- eggNOG:   COG1304
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   LWEL386043:LWE1399-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 39443; Mature: 39443

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLDDIQLIGTSIPRYNVKDIDLTTTIFGVN
CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEE
VSLPFYINAMTGGSRHTKKINADLAEIAREVAIPMAVGSQSAALKNSSLMDTYQIVREVN
EECCEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHCC
PSGIIMANVSPEVAVQDGLRAIEMLEANALQIHINPAQELVMQEGDRSFSHWLARIEEYV
CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHH
KRSPVPIIVKEVGFGMTRETVKTLREVGVETVDLAGKGGTNFAQIENDRRRDQAYDFLLD
HHCCCCEEEEHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHH
WGISTGQSLIDMQHIDAPKIAYLASGGIRNPLDIVKSLALGADSVGMAGQIIYSLKKDGV
CCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
SNTIEKLELWKEQLRGLFVLADAKNIAELKETSLIVNGKLAEWGNVRGIDLVQLANRK
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHEEEEECCCCCCCCCCCEEHHHCCCCC
>Mature Secondary Structure
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLDDIQLIGTSIPRYNVKDIDLTTTIFGVN
CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEE
VSLPFYINAMTGGSRHTKKINADLAEIAREVAIPMAVGSQSAALKNSSLMDTYQIVREVN
EECCEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHCC
PSGIIMANVSPEVAVQDGLRAIEMLEANALQIHINPAQELVMQEGDRSFSHWLARIEEYV
CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHH
KRSPVPIIVKEVGFGMTRETVKTLREVGVETVDLAGKGGTNFAQIENDRRRDQAYDFLLD
HHCCCCEEEEHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHH
WGISTGQSLIDMQHIDAPKIAYLASGGIRNPLDIVKSLALGADSVGMAGQIIYSLKKDGV
CCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
SNTIEKLELWKEQLRGLFVLADAKNIAELKETSLIVNGKLAEWGNVRGIDLVQLANRK
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHEEEEECCCCCCCCCCCEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA