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The map label for this gene is nusB [H]

Identifier: 116872790

GI number: 116872790

Start: 1361859

End: 1362245

Strand: Direct

Name: nusB [H]

Synonym: lwe1374

Alternate gene names: 116872790

Gene position: 1361859-1362245 (Clockwise)

Preceding gene: 116872789

Following gene: 116872791

Centisome position: 48.39

GC content: 32.04

Gene sequence:

>387_bases
ATGAAAAGAAGAGAAGCGCGCGAGAAAGCACTTCAAGCATTATTCCAAATCGAACTAAATGAAATGTCACTAGATCAAGC
AATTAAAAACATCATGGAAGATGAGCAAGACGATTATATGGAGAAATTAGTCGAAGGTGTGATGGCAAATAAAGCAGAAA
TAGATGCTATTATTGAGCCTAACTTAGACAATTGGCGCATGGATCGTTTAAGTAAAGTAGATTTATCTTTACTACGTCTT
AGTGTTTATGAAATTAATTATTTAGATGATGTACCAAATAGAGTTAGTTTGAATGAATCCATCGAAATTGCAAAAATTTA
CAGCGATGAAAAATCAAGTAAATTTATTAATGGCGTACTTGCTAATATTGCACCTGAAGATAAATAA

Upstream 100 bases:

>100_bases
CAATGTGCATATCGTTGGCGTACAATTTGAAAAAACAGAAACACTTTCCTTCGATGATTTTGAACTATAAAATTCAAGGA
AAAAAAGGAGCAGCTTTAAC

Downstream 100 bases:

>100_bases
ACTTGATTGAGTGCGAGGATATTCCTTGCACTCCCTTATTTCGCGATTTTTTAAGATAAAACTTGGAAATGAAATTTTAA
GGGGGCAATAAGTATGGGAC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLVEGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRL
SVYEINYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVLANIAPEDK

Sequences:

>Translated_128_residues
MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLVEGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRL
SVYEINYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVLANIAPEDK
>Mature_128_residues
MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLVEGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRL
SVYEINYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVLANIAPEDK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=123, Percent_Identity=35.7723577235772, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 14821; Mature: 14821

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLVEGVMANKAEIDAIIEP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHEEECC
NLDNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
ANIAPEDK
HHCCCCCC
>Mature Secondary Structure
MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLVEGVMANKAEIDAIIEP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHEEECC
NLDNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIAKIYSDEKSSKFINGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
ANIAPEDK
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]