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The map label for this gene is ynbA [H]

Identifier: 116872727

GI number: 116872727

Start: 1302667

End: 1303896

Strand: Direct

Name: ynbA [H]

Synonym: lwe1311

Alternate gene names: 116872727

Gene position: 1302667-1303896 (Clockwise)

Preceding gene: 116872726

Following gene: 116872728

Centisome position: 46.29

GC content: 35.53

Gene sequence:

>1230_bases
ATGCTTGTGGAACGTGAAAAAATAATACTTGTAGGCGTAATATTGCCAAATAAAACAGAAGAAGCTTTTTGGAACTCCAT
GAATGAACTCTATAGCCTTGTTAAAACGGCAAATGGAGAAGTAATGGATGAGTTAACTCAAAAATTAGAACGTGTCAGTC
AGGCCTCGTTCATTGGTTCTGGCAAGCTATTAGAACTAGCAGAACTAGTGGAAATGCATGAAGCTGATGTGGTTATTTTT
AATAGTGAACTCAGTGCTACACAAGTGCGTAATATTTCAAAAGTAGTGGATGCACGAATTATTGATCGTACCCAATTAAT
TTTAGATATTTTTGCCATGCGTGCAAAATCTAAAGAAGGTAAACTACAAGTTGCATATGCTCAGTATAAATATTTGCTAC
CTAGGCTCAGTGGACAAGGAACTTCACTTTCTAAATTAGGTGGAGGAATTGGTTCAAGAGGTCCCGGAGAATCAAAATTA
GAAATGGATAAACGCCATATTCGTGAGAAAATGTATGATATAAAAGCTCAACTAACACACGTAGAGAAACATCGTAAACG
AATCATTGATAGGAGAAATACTCAATCAGTTTTCCGTTTCGGTTTAATTGGATATACAAATGCAGGAAAATCCACCATTT
TTAATCGATTAACTAATGAAACGACACTAGAAGAAGATAAATTATTTGCAACACTTGATCCAACCACTAGAAAAATTCGA
TTTGAAGGCGGATTTCATGCACTTTTGACTGATACAGTTGGATTTATTCAAGATTTACCAACCACTTTGATTGCAGCATT
CCGCTCTACTTTGGAAGAAACTGCGAATGTGGATGTTTTAATTCATATTGTGGATGCATCAGATCCTGATTATTTACAGC
ATGAAACGACTGTTATTAAGTTATTACAAGAATTAGAAATGAACCATCTTCCTACATTAGTTGTTTATAATAAAATGGAT
AAAGCACCTGCAACTTTTGTACCTGATCGTCCGGAACACCTTCTTTTTTCTGCGTTAAATCCGGATGCACCTAAAATAAT
AAAACAACGAATGATCGAATTAATCGAAAAAAATTGGTCTTTCTTTACGATGGATTTATCGGAAGAAAACGGCAAAGAAT
TGGCGCAAATAGGGCAACAAGCATGGTTGACAAAACTGGAATATATTGAAAACGAGGCATGCTACCGAATAGAAGGTTAT
CGTCCTAGAAAGGAATCTACTAATGACTGA

Upstream 100 bases:

>100_bases
AATTCCTTTAAAAGACAAGAAACTCGTTTTTGGCGATGTTTCATGTCTTTTTTTTATGCAAAAAATATGCTACGATTAGA
TTTGTCTGAAAAAGGGAGAT

Downstream 100 bases:

>100_bases
AATACAAACAATAAGAAAAAAAGTCGAACTACAAATTGCTTCTTTGCAAAACGAAACAGAAGAAATTGCAGAATTTAACC
AAGCGAAAGTGTTAGATGCT

Product: GTP-binding protein HflX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MLVEREKIILVGVILPNKTEEAFWNSMNELYSLVKTANGEVMDELTQKLERVSQASFIGSGKLLELAELVEMHEADVVIF
NSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGTSLSKLGGGIGSRGPGESKL
EMDKRHIREKMYDIKAQLTHVEKHRKRIIDRRNTQSVFRFGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIR
FEGGFHALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIKLLQELEMNHLPTLVVYNKMD
KAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWSFFTMDLSEENGKELAQIGQQAWLTKLEYIENEACYRIEGY
RPRKESTND

Sequences:

>Translated_409_residues
MLVEREKIILVGVILPNKTEEAFWNSMNELYSLVKTANGEVMDELTQKLERVSQASFIGSGKLLELAELVEMHEADVVIF
NSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGTSLSKLGGGIGSRGPGESKL
EMDKRHIREKMYDIKAQLTHVEKHRKRIIDRRNTQSVFRFGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIR
FEGGFHALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIKLLQELEMNHLPTLVVYNKMD
KAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWSFFTMDLSEENGKELAQIGQQAWLTKLEYIENEACYRIEGY
RPRKESTND
>Mature_409_residues
MLVEREKIILVGVILPNKTEEAFWNSMNELYSLVKTANGEVMDELTQKLERVSQASFIGSGKLLELAELVEMHEADVVIF
NSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGTSLSKLGGGIGSRGPGESKL
EMDKRHIREKMYDIKAQLTHVEKHRKRIIDRRNTQSVFRFGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIR
FEGGFHALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIKLLQELEMNHLPTLVVYNKMD
KAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWSFFTMDLSEENGKELAQIGQQAWLTKLEYIENEACYRIEGY
RPRKESTND

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133118, Length=215, Percent_Identity=33.4883720930233, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI310133116, Length=198, Percent_Identity=34.3434343434343, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI310124269, Length=190, Percent_Identity=33.6842105263158, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI310124267, Length=190, Percent_Identity=33.6842105263158, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI310124171, Length=190, Percent_Identity=33.6842105263158, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI310124169, Length=190, Percent_Identity=33.6842105263158, Blast_Score=105, Evalue=6e-23,
Organism=Escherichia coli, GI1790615, Length=315, Percent_Identity=42.5396825396825, Blast_Score=248, Evalue=7e-67,
Organism=Caenorhabditis elegans, GI17561038, Length=247, Percent_Identity=31.1740890688259, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24650079, Length=299, Percent_Identity=31.438127090301, Blast_Score=124, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 46607; Mature: 46607

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVEREKIILVGVILPNKTEEAFWNSMNELYSLVKTANGEVMDELTQKLERVSQASFIGS
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
GKLLELAELVEMHEADVVIFNSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEG
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVAYAQYKYLLPRLSGQGTSLSKLGGGIGSRGPGESKLEMDKRHIREKMYDIKAQLTH
CEEEEHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VEKHRKRIIDRRNTQSVFRFGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIR
HHHHHHHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEE
FEGGFHALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIK
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH
LLQELEMNHLPTLVVYNKMDKAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWS
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
FFTMDLSEENGKELAQIGQQAWLTKLEYIENEACYRIEGYRPRKESTND
EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLVEREKIILVGVILPNKTEEAFWNSMNELYSLVKTANGEVMDELTQKLERVSQASFIGS
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
GKLLELAELVEMHEADVVIFNSELSATQVRNISKVVDARIIDRTQLILDIFAMRAKSKEG
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVAYAQYKYLLPRLSGQGTSLSKLGGGIGSRGPGESKLEMDKRHIREKMYDIKAQLTH
CEEEEHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VEKHRKRIIDRRNTQSVFRFGLIGYTNAGKSTIFNRLTNETTLEEDKLFATLDPTTRKIR
HHHHHHHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEE
FEGGFHALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHIVDASDPDYLQHETTVIK
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH
LLQELEMNHLPTLVVYNKMDKAPATFVPDRPEHLLFSALNPDAPKIIKQRMIELIEKNWS
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
FFTMDLSEENGKELAQIGQQAWLTKLEYIENEACYRIEGYRPRKESTND
EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]