Definition Listeria welshimeri serovar 6b str. SLCC5334, complete genome.
Accession NC_008555
Length 2,814,130

Click here to switch to the map view.

The map label for this gene is 116872629

Identifier: 116872629

GI number: 116872629

Start: 1218254

End: 1218946

Strand: Direct

Name: 116872629

Synonym: lwe1213

Alternate gene names: NA

Gene position: 1218254-1218946 (Clockwise)

Preceding gene: 116872628

Following gene: 116872630

Centisome position: 43.29

GC content: 32.9

Gene sequence:

>693_bases
TTGTTGGAATTTATTCAATCGGAAGAAATGAAGAGGTCAGAGTATTTTAATATTATGATTTATGCCAAACCAGGTGCAGG
TAAAACAACTACAATTAAATACTTAAAAGGTAAAACGTTAATGTTAGATTGCGATGGCACGTCAAAAGTTTTAAGTGGTT
TGCCTGATATCACAATTGCAACATTGAATCCTCGTAATCCCGTGCAAGACATGGCAGATTTTTATGGATATGCAAAAACA
CACGCGGATGAATACGACAATGTAGTAATTGATAATTTGAGTCATTATCAAAAACTGTGGTTAATGTTCAATGGAAGAAA
TACTAAATCAGGGCAACCGGAGTTACAACATTATGGGATATTTGATACACATTTAATTGATATGATTTCCGTATTTAATA
ACTTAGCAAACACAAATATTGTTTATACCGCATGGGAAAATACACGACAAATTCAATTAGAAAGTGGTCAACTTTATAAT
CAGTTTTTACCGGATATTAGAGAAAAAGTAGTTAATCATGTGATGGGAATTGTTCCAGTAGTTGCGAGATTAATACGAAA
TCCTGAAACTGGACAACGAGGCTTTCTACTAACAGAGAATAATGGTAATTTTGCAAAAAACCAGTTAGATAATAGAGAAT
TCGCCTTACAAGAAGACCTATTCAAAATTGGTGATATTGATGCTAAAGCTTAG

Upstream 100 bases:

>100_bases
AGATAAAACAAAATTAGGCGATGATTTGAAGAAAGGTATTGAGGTACCAGGTGCGAAAATTATTCAAACAGAAAGATTGC
AAATAAGATAAGGAGGGGTT

Downstream 100 bases:

>100_bases
AGAATATCAACAAGAAATTATAAATGATGTAAAGGGGGCTTTTTTACAGGGATATAACAGACCATGTGTCGTTGCTCCCT
GCGGTTAGGTGCTGGCAAAT

Product: phage nucleotide-binding protein, putative

Products: NA

Alternate protein names: ATPase Involved In DNA Replication Initiation

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCDGTSKVLSGLPDITIATLNPRNPVQDMADFYGYAKT
HADEYDNVVIDNLSHYQKLWLMFNGRNTKSGQPELQHYGIFDTHLIDMISVFNNLANTNIVYTAWENTRQIQLESGQLYN
QFLPDIREKVVNHVMGIVPVVARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFKIGDIDAKA

Sequences:

>Translated_230_residues
MLEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCDGTSKVLSGLPDITIATLNPRNPVQDMADFYGYAKT
HADEYDNVVIDNLSHYQKLWLMFNGRNTKSGQPELQHYGIFDTHLIDMISVFNNLANTNIVYTAWENTRQIQLESGQLYN
QFLPDIREKVVNHVMGIVPVVARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFKIGDIDAKA
>Mature_230_residues
MLEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCDGTSKVLSGLPDITIATLNPRNPVQDMADFYGYAKT
HADEYDNVVIDNLSHYQKLWLMFNGRNTKSGQPELQHYGIFDTHLIDMISVFNNLANTNIVYTAWENTRQIQLESGQLYN
QFLPDIREKVVNHVMGIVPVVARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFKIGDIDAKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26277; Mature: 26277

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCDGTSKVLSGLPDITIA
CCCCHHHHHHHHHCEEEEEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCEEEE
TLNPRNPVQDMADFYGYAKTHADEYDNVVIDNLSHYQKLWLMFNGRNTKSGQPELQHYGI
EECCCCHHHHHHHHHHHHHHCCCCCCCEEHHCHHHHEEEEEEEECCCCCCCCCCHHHCCC
FDTHLIDMISVFNNLANTNIVYTAWENTRQIQLESGQLYNQFLPDIREKVVNHVMGIVPV
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFKIGDIDAKA
HHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLEFIQSEEMKRSEYFNIMIYAKPGAGKTTTIKYLKGKTLMLDCDGTSKVLSGLPDITIA
CCCCHHHHHHHHHCEEEEEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCEEEE
TLNPRNPVQDMADFYGYAKTHADEYDNVVIDNLSHYQKLWLMFNGRNTKSGQPELQHYGI
EECCCCHHHHHHHHHHHHHHCCCCCCCEEHHCHHHHEEEEEEEECCCCCCCCCCHHHCCC
FDTHLIDMISVFNNLANTNIVYTAWENTRQIQLESGQLYNQFLPDIREKVVNHVMGIVPV
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFKIGDIDAKA
HHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA