Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 116872056

GI number: 116872056

Start: 669423

End: 670193

Strand: Direct

Name: yadH [H]

Synonym: lwe0636

Alternate gene names: 116872056

Gene position: 669423-670193 (Clockwise)

Preceding gene: 116872055

Following gene: 116872057

Centisome position: 23.79

GC content: 35.93

Gene sequence:

>771_bases
ATGTTTAATTTATATTACACAGCGTTAAAAAGTCTAGCTGCGAAGGAAACAAATCGTTATATGCGAATTTGGGTGCAGAC
ACTTGTACCACCAGTCATTACAACTTCGCTTTACTTTATTATTTTTGGGAAAATGATTGGCAATCGTATTGGTGAGATGA
ACGGCTTTTCTTATATGGAATATATCGTTCCGGGGCTGATAATGATGTCCGTAATTACGAGTTCTTATTCGAATGTATCC
TCTTCCTTTTTCTCACAAAAGTTTCAGAAAAATATTGAAGAAATTCTTGTTGCTCCAGTCCCTACACATATCATTATCTG
GGGATTTTTGATCGGTGGGATTGGAAGAAGTGTTTTAGTAGGTACGCTTGTTACGATTATTTCCATGGTTTTTGTACCAT
TACACATTCATTCTTGGGTGTTTGGAATTATTACGCTTTTAATGACTGCAATATTATTTTCACTTGCTGGATTGATTAAT
GGGATTTTTGCTAGATCATTTGATGATGTGTCGATTGTGCCAACATTTGTATTACAACCGTTAACATATCTAGGCGGCGT
ATTTTATGCAATTTCGATGTTACCGCCAATCTGGCAAGCCATTTCCAAAGTGAACCCAATTGTCTATATGATTTCAGGAT
TTCGATATGGTTTTCTTGGAGTAAGTGATGTTTCCATCTGGGTATCCATGTCCATCCTTGTATTATTTAGTGTCGTACTT
TACTCCATTTGTTGGTATCTTATTAACAAAGGACGAGGACTTAGAAGTTAA

Upstream 100 bases:

>100_bases
GAGCGTGGCGTAAAAGTGCTTTCGATGCGAAATAAATCTAATCGACTCGAAGAACTATTTTTGAAAATTACAGAAGAAAA
ACATCAAGTGGGGGAGAAAC

Downstream 100 bases:

>100_bases
TAGAAGTTTTGAAGAGAGATCGGGGTGCCGTTCTCTTTTTTTATAATGGATTGTCTTACTTATCTTAAACTCCCATGTAT
TGGTGTAGAAATAAAAAACT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MFNLYYTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGKMIGNRIGEMNGFSYMEYIVPGLIMMSVITSSYSNVS
SSFFSQKFQKNIEEILVAPVPTHIIIWGFLIGGIGRSVLVGTLVTIISMVFVPLHIHSWVFGIITLLMTAILFSLAGLIN
GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGFLGVSDVSIWVSMSILVLFSVVL
YSICWYLINKGRGLRS

Sequences:

>Translated_256_residues
MFNLYYTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGKMIGNRIGEMNGFSYMEYIVPGLIMMSVITSSYSNVS
SSFFSQKFQKNIEEILVAPVPTHIIIWGFLIGGIGRSVLVGTLVTIISMVFVPLHIHSWVFGIITLLMTAILFSLAGLIN
GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGFLGVSDVSIWVSMSILVLFSVVL
YSICWYLINKGRGLRS
>Mature_256_residues
MFNLYYTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGKMIGNRIGEMNGFSYMEYIVPGLIMMSVITSSYSNVS
SSFFSQKFQKNIEEILVAPVPTHIIIWGFLIGGIGRSVLVGTLVTIISMVFVPLHIHSWVFGIITLLMTAILFSLAGLIN
GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGFLGVSDVSIWVSMSILVLFSVVL
YSICWYLINKGRGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=67.578125, Blast_Score=369, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28682; Mature: 28682

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]