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The map label for this gene is yubA [H]

Identifier: 116871971

GI number: 116871971

Start: 588256

End: 589425

Strand: Direct

Name: yubA [H]

Synonym: lwe0551

Alternate gene names: 116871971

Gene position: 588256-589425 (Clockwise)

Preceding gene: 116871970

Following gene: 116871972

Centisome position: 20.9

GC content: 33.42

Gene sequence:

>1170_bases
GTGAAAGGGTCATTAACAAAATTTAAGCAATTTTTTATTGAAAATAAGTTTGTGTTAGGTCTATTAATTTTTCTATTAGT
AGCACTTGATATTTATGTTTTAACGAAGATATCCTTTATTTTTGATCCGCTAATGGTCATTCTTAAAACAGTTGCTGCGC
CAATTATCTTGGCAGGGATTTCTTATTACTTATTTAATCCAATAATTGATTGGTTAGAGAAGAAAAAGTGGAAACGTGGC
TGGGCAATTGCCTTGCTATATATAGTAATTATTGGCTTAATTATTCTACTATTTAGTTTCGTCATACCAGCTGTAAAAGA
TCAAATTGTTAGCTTGTTCAAATCGTTCCCAGGTTACTGGGATCAAATCACACAAAGGTTCAATGAATTTAGTCGATCAA
GCCTTTTTGACCAACTAAAAGACAAACTGAGTACGAATATGAGCGATATTATGAAAACAATTTCGACAAAAGGAACTTCT
GTAGTTAATAGCGCTATTTCAAGTATTGGTAATATTGTTGGAACTGTAACCGAAGTAGTTTTAGCAATTGTAACTACCCC
GCTTGTATTATTCTACTTATTAAAAGATGGGAAGAAATTGCCAGACTTTCTTTTAAAAATGTTACCTGTAAATGGTCGTG
CACATACTCGTCAAGTACTTGGTGAAGCAAACCACCAAATTAGTTCTTATATTCGTGGTCAAATTATCGTTAGTTTATGT
ATAGGTATTTTGCTATTTATTGGTTATTTAATTATCGGCTTACCATATGCATTAACACTTGCGATTATAGCAGCGTGTAC
TAGTATTGTTCCTTACTTAGGGCCTGCAATTGCAATTACACCAGCTATTATTATCGCGATTGTAACATCACCATGGTTAT
TAATTAAATTAATTATTGTATGGTGTGTGGTGCAATTACTAGAAGGTAAATTTATTTCACCACAAGTAATGGGTAAAACA
CTCAAAGTACATCCAATCACGATTTTATTTGTTATTTTGGTAGCTGGAAATCTTTTCGGTGTATTAGGAGTTATCTTTGC
AGTTCCTGGATATGCGGTGCTCAAAGTTATTGTTACCCATGTATTTATATGGTTCAAACGAGTTTCTGGCTTATACGGCG
AACAACCTGAAAGTGAGTATGTTGTCACCCCTCCAGAAGAAAAAGAATGA

Upstream 100 bases:

>100_bases
CCTGATTTTTTTCGATTTTATGGGTAAAATAGTGAGAACTGGGGTATTAACCTATATAATAGTAACTAAAGAAAAATAAA
TAAAAAAAGAGGGTGGGACA

Downstream 100 bases:

>100_bases
CTAATTTAAGCTCTATTCGATAGAAAATGATTCATTTCTATCGAATAGAGCTTTTTTGTATATTATGGGGTTGAATAAAA
AAGTTCACAAAAAAGACACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKGSLTKFKQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKKKWKRG
WAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQRFNEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTS
VVNSAISSIGNIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRVSGLYGEQPESEYVVTPPEEKE

Sequences:

>Translated_389_residues
MKGSLTKFKQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKKKWKRG
WAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQRFNEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTS
VVNSAISSIGNIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRVSGLYGEQPESEYVVTPPEEKE
>Mature_389_residues
MKGSLTKFKQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKKKWKRG
WAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQRFNEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTS
VVNSAISSIGNIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRVSGLYGEQPESEYVVTPPEEKE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=314, Percent_Identity=28.6624203821656, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082271, Length=307, Percent_Identity=22.1498371335505, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 43221; Mature: 43221

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCCEEECCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]