| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is mngB [H]
Identifier: 116871809
GI number: 116871809
Start: 400352
End: 402934
Strand: Direct
Name: mngB [H]
Synonym: lwe0389
Alternate gene names: 116871809
Gene position: 400352-402934 (Clockwise)
Preceding gene: 116871808
Following gene: 116871811
Centisome position: 14.23
GC content: 38.4
Gene sequence:
>2583_bases ATGGTTAAAGCACATATTGTGAACCATACGCATTGGGACCGAGAGTGGTATTTCACCTCTGCCGATGCACTGGTTCTAAG TGAACAACTTTTTACAGAAGTGATTGACGAATTAAAAAAGCATCCAGAAGCAAACTTTGTACTGGATGGACAATTGTCGA TTTTAGATGATTATGTTGCGCTTCATCCGGATAAATTAGCAGAAATTAAGCAGCTAATTGCAGATGAACAACTTTTTATT GGACCGTGGTTTACGCAAACAGATGCCTTCTTCGCGCATGGTGAGTCGATTTTGCGCAATGCGATGATTGGGATTTTTGA TAGTAAAAAATATGGCGACTATATGAAAATTGGGTATTTACCGGATACATTTGGTTTTAATGCCCAAATGCCAACTTTAC TTGAACATGCTGGATTTGATAATGTGATTTTCTGGCGTGGGATACATTTGGGAGAGCATGTCACATCTCCGTATTTTAAA TGGCAAGGGCTGGGTGAGAATGTTTCTATCTATGCTATCAATATGCCACAAGGTTACGGCACAGGGATGCTACTTGAACC AACAGCTGCATATGTGGATGGACGCCTTGATCCAGCAATTGATTTTATTGAAAAATATAGTAAAACGGCAGAAGTTTTAA TTCCATCTGGAAATGACCAGCTGAATATTATTAGCAATTTTGCCGAAAAATTGGCGGAAATCAACAAGATGGGACGCCAT GATTATCAACTTAGCACCTATCAAGATTTTATTCAATATGTAAAAGAGTTGCCAGATTTAGAAACCTATCGTGGTGAATT TAGAAGTCCGGTGTTAGCGCGTGTGCACAAAACAATTGGCTCAAGCCGGATGAATATAAAGCTGAACAGCGCTTCTTTGG AGCAAAAACTCTTAACGCGTATCGAGCCACTACTTGTTATTGCCAAAGCATCTGGAATTTCTATCAGCGAGCGTTTACTA ATGCATACCTGGAAAAAATTACTAGAAGGTCAAGCACATGATAGTTTGGCAGGTTGTGTTTCTGATCCAGTTGCTGAAGA TATTTTACATCGGATGAAAGAAGCGGATGAATTATGTGATAGTATCGAAAACACAATTGTAAAGAAAATTGCGGATGATT TGGAACTAAATGCAAATGAAATTTTAGTTTTTAATACGGATTTACATGATTTTGACGGATTTAAAGAAATTCAAATAGTA ACTGAACATAAAAACATCCATTTTCCAGCGTTTCAGAATGCGACAATTGTTAAAGAAGAATTTATTCCATCGCGTGAAAA TGTGCTGGAAGAAACGCCAGCCGGGAACCGTTTTATTGAAGAACCGGGTTATTTTGTGCTTCAAGTACGTGTGAAAATCG AGTTGCCAGGTCTTGGTTACCGAGTAATTGCTTTTGAAGAAAACGACCGCGAACTGGATTCGATGTTTGCTGCTAACGAT GCCACTATCCAAAATGAAACCTATAAAATCACTTTCCAAGATGGAGAAATTTCTCTTGAAAAACCAGATGGTAAGCGCAT AACTTCCTTCATTAGTATAGAGGATGATATAAATGCAGGTGATACGTACGATTATTCACCGCTAGCAGGAGATATTGCAG AGTTGTTCTCTTTTTCCAAAGCAAGCACTGAGAAATCAAGTGAAGTAGAACGTTTAATTTTGACTGGAAAGAATAATTTT CCACTTGATCGTTTGACGAAAGAAGGGAATGGCAGGCTACAAATCAAACTAATTTTGGAGCTGAAAAAAGGTAGCGAATT ACTAGATGTTAAGGTTGAAGTGGATAATCAAATTAAAAATCATCGACTACGCTTAAAAGTCAATACAGGTGTGCATACGG ACTCCAATATTGCATCGCTTCCGTTTGGTTATATCAAAAGAATGCCAGAGGTTCCGGAGAATTGGCAAGAAACCTACAGC GAAATGCCAATTGATATCGAACCACTTGAACAAAACGTGACGCTAACTAGTGAAACGGAAAGTTGTACAATTTTCACACG TGGAATTAAAGAATATCAACAATTGGACCAACATATAGCACTGACACTTCTCGCAACAACAGGTCAACTTGGAAAACCCG ACTTAGCATATCGACCAGGCCGGGCATCAGGCGACACAACAAAAAAAGGTCATGTACTCATCGAAACAGAGGGCGCCCAG TTACTTGGCAAACATTCATTCACTTTAGCCATTTACCTAGATAACCAAGCTTTCAATGAACGAAAAACCGCAGAACGAAC AAAAGATTTCAACCAAGCAAACGTGTCCTATCAACGTCAGCCGTTCAATCATTTTTTACATCGTTTAGACAACAAAATCC AGAAAACGGAACGAAAATTAGGCGCAAAACAAACATTAGCTATGTTAAATTTACCAAAAGAATATTTAGTTTCAGCATGT CACCCATCATATTATCATGCAAACAAATACATCATTCGTATAGAAAACCCAACCAACCTACCCCAAAAGTTGGAATTACC AAATATGCGATTTGACTATGTAAATGCTATCGAAGAAACCGTCGAAAACCAAGACAACACGATTCCAGCATATGGCGCTG TCACACTAAGATTAGATTTATAA
Upstream 100 bases:
>100_bases TGCTTTACGGAAAGCAAGTGCCGGTGAGGAAATGGCAGGCTCTAGCTACGATGATGAAATAGACGAAGCGGAATGGGAAG CATAAAAAACGGAGGTAATT
Downstream 100 bases:
>100_bases AAAGAAAACTTGCTCAAAGCTTTTATTTTGAGCAAGTTTTTTGTATTAACCGCAAAAATTCTTTAGAAGCACTCGAAAAA GTTTGATTCTTTTTCCAAAC
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEANFVLDGQLSILDDYVALHPDKLAEIKQLIADEQLFI GPWFTQTDAFFAHGESILRNAMIGIFDSKKYGDYMKIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVTSPYFK WQGLGENVSIYAINMPQGYGTGMLLEPTAAYVDGRLDPAIDFIEKYSKTAEVLIPSGNDQLNIISNFAEKLAEINKMGRH DYQLSTYQDFIQYVKELPDLETYRGEFRSPVLARVHKTIGSSRMNIKLNSASLEQKLLTRIEPLLVIAKASGISISERLL MHTWKKLLEGQAHDSLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLELNANEILVFNTDLHDFDGFKEIQIV TEHKNIHFPAFQNATIVKEEFIPSRENVLEETPAGNRFIEEPGYFVLQVRVKIELPGLGYRVIAFEENDRELDSMFAAND ATIQNETYKITFQDGEISLEKPDGKRITSFISIEDDINAGDTYDYSPLAGDIAELFSFSKASTEKSSEVERLILTGKNNF PLDRLTKEGNGRLQIKLILELKKGSELLDVKVEVDNQIKNHRLRLKVNTGVHTDSNIASLPFGYIKRMPEVPENWQETYS EMPIDIEPLEQNVTLTSETESCTIFTRGIKEYQQLDQHIALTLLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQ LLGKHSFTLAIYLDNQAFNERKTAERTKDFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLAMLNLPKEYLVSAC HPSYYHANKYIIRIENPTNLPQKLELPNMRFDYVNAIEETVENQDNTIPAYGAVTLRLDL
Sequences:
>Translated_860_residues MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEANFVLDGQLSILDDYVALHPDKLAEIKQLIADEQLFI GPWFTQTDAFFAHGESILRNAMIGIFDSKKYGDYMKIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVTSPYFK WQGLGENVSIYAINMPQGYGTGMLLEPTAAYVDGRLDPAIDFIEKYSKTAEVLIPSGNDQLNIISNFAEKLAEINKMGRH DYQLSTYQDFIQYVKELPDLETYRGEFRSPVLARVHKTIGSSRMNIKLNSASLEQKLLTRIEPLLVIAKASGISISERLL MHTWKKLLEGQAHDSLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLELNANEILVFNTDLHDFDGFKEIQIV TEHKNIHFPAFQNATIVKEEFIPSRENVLEETPAGNRFIEEPGYFVLQVRVKIELPGLGYRVIAFEENDRELDSMFAAND ATIQNETYKITFQDGEISLEKPDGKRITSFISIEDDINAGDTYDYSPLAGDIAELFSFSKASTEKSSEVERLILTGKNNF PLDRLTKEGNGRLQIKLILELKKGSELLDVKVEVDNQIKNHRLRLKVNTGVHTDSNIASLPFGYIKRMPEVPENWQETYS EMPIDIEPLEQNVTLTSETESCTIFTRGIKEYQQLDQHIALTLLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQ LLGKHSFTLAIYLDNQAFNERKTAERTKDFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLAMLNLPKEYLVSAC HPSYYHANKYIIRIENPTNLPQKLELPNMRFDYVNAIEETVENQDNTIPAYGAVTLRLDL >Mature_860_residues MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEANFVLDGQLSILDDYVALHPDKLAEIKQLIADEQLFI GPWFTQTDAFFAHGESILRNAMIGIFDSKKYGDYMKIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVTSPYFK WQGLGENVSIYAINMPQGYGTGMLLEPTAAYVDGRLDPAIDFIEKYSKTAEVLIPSGNDQLNIISNFAEKLAEINKMGRH DYQLSTYQDFIQYVKELPDLETYRGEFRSPVLARVHKTIGSSRMNIKLNSASLEQKLLTRIEPLLVIAKASGISISERLL MHTWKKLLEGQAHDSLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLELNANEILVFNTDLHDFDGFKEIQIV TEHKNIHFPAFQNATIVKEEFIPSRENVLEETPAGNRFIEEPGYFVLQVRVKIELPGLGYRVIAFEENDRELDSMFAAND ATIQNETYKITFQDGEISLEKPDGKRITSFISIEDDINAGDTYDYSPLAGDIAELFSFSKASTEKSSEVERLILTGKNNF PLDRLTKEGNGRLQIKLILELKKGSELLDVKVEVDNQIKNHRLRLKVNTGVHTDSNIASLPFGYIKRMPEVPENWQETYS EMPIDIEPLEQNVTLTSETESCTIFTRGIKEYQQLDQHIALTLLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQ LLGKHSFTLAIYLDNQAFNERKTAERTKDFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLAMLNLPKEYLVSAC HPSYYHANKYIIRIENPTNLPQKLELPNMRFDYVNAIEETVENQDNTIPAYGAVTLRLDL
Specific function: May hydrolyze mannosyl-D-glycerate to mannose-6- phosphate and glycerate [H]
COG id: COG0383
COG function: function code G; Alpha-mannosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 38 family [H]
Homologues:
Organism=Escherichia coli, GI1786952, Length=727, Percent_Identity=31.636863823934, Blast_Score=355, Evalue=8e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR011330 - InterPro: IPR011682 - InterPro: IPR015341 - InterPro: IPR000602 [H]
Pfam domain/function: PF09261 Alpha-mann_mid; PF01074 Glyco_hydro_38; PF07748 Glyco_hydro_38C [H]
EC number: NA
Molecular weight: Translated: 97809; Mature: 97809
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEANFVLDGQLSILDDYVA CEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH LHPDKLAEIKQLIADEQLFIGPWFTQTDAFFAHGESILRNAMIGIFDSKKYGDYMKIGYL CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCHHHHHHHHHEEECCCCCCCEEEEECC PDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVTSPYFKWQGLGENVSIYAINMPQGYG CCCCCCCCCCCHHHHHCCCCCEEEEECEECCCCCCCCCEEECCCCCCEEEEEEECCCCCC TGMLLEPTAAYVDGRLDPAIDFIEKYSKTAEVLIPSGNDQLNIISNFAEKLAEINKMGRH CCEEECCHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC DYQLSTYQDFIQYVKELPDLETYRGEFRSPVLARVHKTIGSSRMNIKLNSASLEQKLLTR CCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH IEPLLVIAKASGISISERLLMHTWKKLLEGQAHDSLAGCVSDPVAEDILHRMKEADELCD HCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH SIENTIVKKIADDLELNANEILVFNTDLHDFDGFKEIQIVTEHKNIHFPAFQNATIVKEE HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEECCCCCCCEEEHHH FIPSRENVLEETPAGNRFIEEPGYFVLQVRVKIELPGLGYRVIAFEENDRELDSMFAAND CCCCHHHHHHCCCCCCCEECCCCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHCCC ATIQNETYKITFQDGEISLEKPDGKRITSFISIEDDINAGDTYDYSPLAGDIAELFSFSK CEEECCEEEEEEECCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH ASTEKSSEVERLILTGKNNFPLDRLTKEGNGRLQIKLILELKKGSELLDVKVEVDNQIKN CCCCCHHHHEEEEEECCCCCCHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCC HRLRLKVNTGVHTDSNIASLPFGYIKRMPEVPENWQETYSEMPIDIEPLEQNVTLTSETE CEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCC SCTIFTRGIKEYQQLDQHIALTLLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQ CEEEEHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH LLGKHSFTLAIYLDNQAFNERKTAERTKDFNQANVSYQRQPFNHFLHRLDNKIQKTERKL HCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH GAKQTLAMLNLPKEYLVSACHPSYYHANKYIIRIENPTNLPQKLELPNMRFDYVNAIEET CHHHHHHHHCCCHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH VENQDNTIPAYGAVTLRLDL HCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEANFVLDGQLSILDDYVA CEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH LHPDKLAEIKQLIADEQLFIGPWFTQTDAFFAHGESILRNAMIGIFDSKKYGDYMKIGYL CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCHHHHHHHHHEEECCCCCCCEEEEECC PDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVTSPYFKWQGLGENVSIYAINMPQGYG CCCCCCCCCCCHHHHHCCCCCEEEEECEECCCCCCCCCEEECCCCCCEEEEEEECCCCCC TGMLLEPTAAYVDGRLDPAIDFIEKYSKTAEVLIPSGNDQLNIISNFAEKLAEINKMGRH CCEEECCHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC DYQLSTYQDFIQYVKELPDLETYRGEFRSPVLARVHKTIGSSRMNIKLNSASLEQKLLTR CCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH IEPLLVIAKASGISISERLLMHTWKKLLEGQAHDSLAGCVSDPVAEDILHRMKEADELCD HCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH SIENTIVKKIADDLELNANEILVFNTDLHDFDGFKEIQIVTEHKNIHFPAFQNATIVKEE HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEECCCCCCCEEEHHH FIPSRENVLEETPAGNRFIEEPGYFVLQVRVKIELPGLGYRVIAFEENDRELDSMFAAND CCCCHHHHHHCCCCCCCEECCCCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHCCC ATIQNETYKITFQDGEISLEKPDGKRITSFISIEDDINAGDTYDYSPLAGDIAELFSFSK CEEECCEEEEEEECCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH ASTEKSSEVERLILTGKNNFPLDRLTKEGNGRLQIKLILELKKGSELLDVKVEVDNQIKN CCCCCHHHHEEEEEECCCCCCHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCC HRLRLKVNTGVHTDSNIASLPFGYIKRMPEVPENWQETYSEMPIDIEPLEQNVTLTSETE CEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCC SCTIFTRGIKEYQQLDQHIALTLLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQ CEEEEHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH LLGKHSFTLAIYLDNQAFNERKTAERTKDFNQANVSYQRQPFNHFLHRLDNKIQKTERKL HCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH GAKQTLAMLNLPKEYLVSACHPSYYHANKYIIRIENPTNLPQKLELPNMRFDYVNAIEET CHHHHHHHHCCCHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH VENQDNTIPAYGAVTLRLDL HCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 9063979 [H]