Click here to switch to the map view.

The map label for this gene is cydC [C]

Identifier: 116871653

GI number: 116871653

Start: 248725

End: 250503

Strand: Direct

Name: cydC [C]

Synonym: lwe0233

Alternate gene names: 116871653

Gene position: 248725-250503 (Clockwise)

Preceding gene: 116871652

Following gene: 116871654

Centisome position: 8.84

GC content: 29.23

Gene sequence:

>1779_bases
ATGACTAAAATAAATAAATTTAGTATTTTTTCTATCAAAGAACCAGGAATATATACTATTGGCGGAGTTAACGGAAGTGG
AAAAACAACTTTTATTGAAAATGAATTAAAAGATAATACAACAAAAGCAAAAGATGTAGCTTATTTTTCACAAAAAAACT
GGAAATATAAAACAACAGTAGAGAAATATTTGCATTTTCCAAAAACAAACCCTCAGTTGGTAGAAAAGTATTGTGAGGCG
TTCTCAATTGATAGTTATTGCTTAGACAAAGATATTCAATCATTAAGTGGCGGCGAGTTTGTTAAAGTAGAGTTAGTTAG
AACATTATCTTTAGATGCCCCCATACTAGTTTTCGATGAGCCTACTAATAACCTAGATAATGGTTCTTCGGAGACGTTGG
CCAACATCTTAAGCGAACTATCTAAAACGAAAATAATTTATTTAGTGAGCCATGATGCACGCCTTGGAAACTTATTTGAG
AAAACTATTCTTATAAATAAACTAGAAATTGAAGTTTCACCTTTAATTCCATTAAAGAATAAGGACATACCGATAAGGGA
AAAGAATGTAGTAGCGAATCGGAGAATTATCACCTACTTATTAAAATCAAAATTTAATTTTTTGATGTTGGCTTTGATTA
TAGTTTTGTCTATCTTATTAACTATTATCGTCTCTACTATTATTGCTCGCTCAGTTCCAATGGATGAGGAATTAGCAAGT
GATTATAATTTTGAAATGTTGGATGTTGCGGAGAATTATTCTAGATATTTTAATATTGAAATGACTGATAATGAAATTGA
AGATGAATTCCAAAAACCTAATCATCTCACTACAAATGAATTAATAAAACTGCAAGAAAAAAAATATGTTGAGCAAATTT
ATGTTGTAGATGAAAATTATATAAATGGACTTACTTTAGATGATTCCAAGTTCGAAGTTCTTGGGCTTCCGGAAATAATA
ACCAATTCACCTAGTTATATTAATGCATTCCCTGTGACTAAAATTCATTTAATCAAAGGACGTTTTCCAAAAGATGGTGC
AAAGGAAATTGCATTATCTTATGGTAATTTAAAAAAGTTTTTCCAAGATGATTCAAGTGAAGAATCGTTTATAGGAAAGA
AAGTGAAATTTGAAGGAGATTATTATAAGATTGTAGGTATTGTTAACTCACCTGTAGCTGCAATCTCTTACTCAAAACAA
GCACAAAAATATGGTGCGGTGGAAGTTACGGATAAATCTGCTGAGAAGCTTAATAGTATATTGACAAATTTGGAAAAGCA
AGGATATGACAATCCTAATTTCTATATTATTTCTATGAAGCTAGCTGATAAAGACCAACATGAACTATTAAGTTATTTAA
AAAAACATGGACCTAGTTATCAATATAGTTCTAATTATATATATGGTGAGTTACAACTATCTTTCTATAAAGAAAACTTG
AAAAAAATCATTCCTTTATCAGTAGTGTTTTCTCTTATTGTGGCTGGATTAATTCTCATCTTTGGAAGAAAATCATTTAG
TTTAATTAATGGATTTTTAAATGATATGTCCAATTTGAATTTTAGACCTAGGGTGAACAAGGGGTTTATTTATTTGATAA
TGTTATTCGATTTTTTAATATGTATACCAGCATGTCTATTAGTAAATCAACTTATTATTGGACATAGTATTGGGATGATT
ATGCTACTGCCAACTTTAGTAATTTCGTTAATCATTTTTATGCTAACATTGCTATTCATGAGCTACCGGGATAAAAAGAA
TGATTTTAGAAATTTATAA

Upstream 100 bases:

>100_bases
TAATTAACATAACAATTATAGGCGTGACAACTTTATTCTACGCACTTGTGTATATCATTACCCCTTCAACCATTAAATAC
AACATCAGAAAGGCAATTAT

Downstream 100 bases:

>100_bases
GAGTTGGATTATAGTGCTTGTATTGCACGAACTGACGCACATATTCTTTGTGGTTCTTTTCAGAGGGAAAATAGATAAAG
TGATAATTGGCAACTTTATT

Product: ABC transporter, ATP-binding/permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 592; Mature: 591

Protein sequence:

>592_residues
MTKINKFSIFSIKEPGIYTIGGVNGSGKTTFIENELKDNTTKAKDVAYFSQKNWKYKTTVEKYLHFPKTNPQLVEKYCEA
FSIDSYCLDKDIQSLSGGEFVKVELVRTLSLDAPILVFDEPTNNLDNGSSETLANILSELSKTKIIYLVSHDARLGNLFE
KTILINKLEIEVSPLIPLKNKDIPIREKNVVANRRIITYLLKSKFNFLMLALIIVLSILLTIIVSTIIARSVPMDEELAS
DYNFEMLDVAENYSRYFNIEMTDNEIEDEFQKPNHLTTNELIKLQEKKYVEQIYVVDENYINGLTLDDSKFEVLGLPEII
TNSPSYINAFPVTKIHLIKGRFPKDGAKEIALSYGNLKKFFQDDSSEESFIGKKVKFEGDYYKIVGIVNSPVAAISYSKQ
AQKYGAVEVTDKSAEKLNSILTNLEKQGYDNPNFYIISMKLADKDQHELLSYLKKHGPSYQYSSNYIYGELQLSFYKENL
KKIIPLSVVFSLIVAGLILIFGRKSFSLINGFLNDMSNLNFRPRVNKGFIYLIMLFDFLICIPACLLVNQLIIGHSIGMI
MLLPTLVISLIIFMLTLLFMSYRDKKNDFRNL

Sequences:

>Translated_592_residues
MTKINKFSIFSIKEPGIYTIGGVNGSGKTTFIENELKDNTTKAKDVAYFSQKNWKYKTTVEKYLHFPKTNPQLVEKYCEA
FSIDSYCLDKDIQSLSGGEFVKVELVRTLSLDAPILVFDEPTNNLDNGSSETLANILSELSKTKIIYLVSHDARLGNLFE
KTILINKLEIEVSPLIPLKNKDIPIREKNVVANRRIITYLLKSKFNFLMLALIIVLSILLTIIVSTIIARSVPMDEELAS
DYNFEMLDVAENYSRYFNIEMTDNEIEDEFQKPNHLTTNELIKLQEKKYVEQIYVVDENYINGLTLDDSKFEVLGLPEII
TNSPSYINAFPVTKIHLIKGRFPKDGAKEIALSYGNLKKFFQDDSSEESFIGKKVKFEGDYYKIVGIVNSPVAAISYSKQ
AQKYGAVEVTDKSAEKLNSILTNLEKQGYDNPNFYIISMKLADKDQHELLSYLKKHGPSYQYSSNYIYGELQLSFYKENL
KKIIPLSVVFSLIVAGLILIFGRKSFSLINGFLNDMSNLNFRPRVNKGFIYLIMLFDFLICIPACLLVNQLIIGHSIGMI
MLLPTLVISLIIFMLTLLFMSYRDKKNDFRNL
>Mature_591_residues
TKINKFSIFSIKEPGIYTIGGVNGSGKTTFIENELKDNTTKAKDVAYFSQKNWKYKTTVEKYLHFPKTNPQLVEKYCEAF
SIDSYCLDKDIQSLSGGEFVKVELVRTLSLDAPILVFDEPTNNLDNGSSETLANILSELSKTKIIYLVSHDARLGNLFEK
TILINKLEIEVSPLIPLKNKDIPIREKNVVANRRIITYLLKSKFNFLMLALIIVLSILLTIIVSTIIARSVPMDEELASD
YNFEMLDVAENYSRYFNIEMTDNEIEDEFQKPNHLTTNELIKLQEKKYVEQIYVVDENYINGLTLDDSKFEVLGLPEIIT
NSPSYINAFPVTKIHLIKGRFPKDGAKEIALSYGNLKKFFQDDSSEESFIGKKVKFEGDYYKIVGIVNSPVAAISYSKQA
QKYGAVEVTDKSAEKLNSILTNLEKQGYDNPNFYIISMKLADKDQHELLSYLKKHGPSYQYSSNYIYGELQLSFYKENLK
KIIPLSVVFSLIVAGLILIFGRKSFSLINGFLNDMSNLNFRPRVNKGFIYLIMLFDFLICIPACLLVNQLIIGHSIGMIM
LLPTLVISLIIFMLTLLFMSYRDKKNDFRNL

Specific function: Somehow Involved In The Cytochrome D Branch Of Aerobic Respiration. Seems To Be A Component Of A Transport System. [C]

COG id: COG1121

COG function: function code P; ABC-type Mn/Zn transport systems, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67606; Mature: 67475

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKINKFSIFSIKEPGIYTIGGVNGSGKTTFIENELKDNTTKAKDVAYFSQKNWKYKTTV
CCCCCCEEEEEECCCCEEEEECCCCCCCEEEECCHHCCCCCHHHHHHHHHCCCCEEHHHH
EKYLHFPKTNPQLVEKYCEAFSIDSYCLDKDIQSLSGGEFVKVELVRTLSLDAPILVFDE
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEC
PTNNLDNGSSETLANILSELSKTKIIYLVSHDARLGNLFEKTILINKLEIEVSPLIPLKN
CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEECCCCCCC
KDIPIREKNVVANRRIITYLLKSKFNFLMLALIIVLSILLTIIVSTIIARSVPMDEELAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
DYNFEMLDVAENYSRYFNIEMTDNEIEDEFQKPNHLTTNELIKLQEKKYVEQIYVVDENY
CCCEEEEHHHHCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEECCC
INGLTLDDSKFEVLGLPEIITNSPSYINAFPVTKIHLIKGRFPKDGAKEIALSYGNLKKF
CCCEEECCCCEEEEECHHHHCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
FQDDSSEESFIGKKVKFEGDYYKIVGIVNSPVAAISYSKQAQKYGAVEVTDKSAEKLNSI
HCCCCCCHHHCCCEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHH
LTNLEKQGYDNPNFYIISMKLADKDQHELLSYLKKHGPSYQYSSNYIYGELQLSFYKENL
HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEECCCEEEEEEEHHHHHHHH
KKIIPLSVVFSLIVAGLILIFGRKSFSLINGFLNDMSNLNFRPRVNKGFIYLIMLFDFLI
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
CIPACLLVNQLIIGHSIGMIMLLPTLVISLIIFMLTLLFMSYRDKKNDFRNL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
TKINKFSIFSIKEPGIYTIGGVNGSGKTTFIENELKDNTTKAKDVAYFSQKNWKYKTTV
CCCCCEEEEEECCCCEEEEECCCCCCCEEEECCHHCCCCCHHHHHHHHHCCCCEEHHHH
EKYLHFPKTNPQLVEKYCEAFSIDSYCLDKDIQSLSGGEFVKVELVRTLSLDAPILVFDE
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEC
PTNNLDNGSSETLANILSELSKTKIIYLVSHDARLGNLFEKTILINKLEIEVSPLIPLKN
CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEECCCCCCC
KDIPIREKNVVANRRIITYLLKSKFNFLMLALIIVLSILLTIIVSTIIARSVPMDEELAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
DYNFEMLDVAENYSRYFNIEMTDNEIEDEFQKPNHLTTNELIKLQEKKYVEQIYVVDENY
CCCEEEEHHHHCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEECCC
INGLTLDDSKFEVLGLPEIITNSPSYINAFPVTKIHLIKGRFPKDGAKEIALSYGNLKKF
CCCEEECCCCEEEEECHHHHCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
FQDDSSEESFIGKKVKFEGDYYKIVGIVNSPVAAISYSKQAQKYGAVEVTDKSAEKLNSI
HCCCCCCHHHCCCEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHH
LTNLEKQGYDNPNFYIISMKLADKDQHELLSYLKKHGPSYQYSSNYIYGELQLSFYKENL
HHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEECCCEEEEEEEHHHHHHHH
KKIIPLSVVFSLIVAGLILIFGRKSFSLINGFLNDMSNLNFRPRVNKGFIYLIMLFDFLI
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
CIPACLLVNQLIIGHSIGMIMLLPTLVISLIIFMLTLLFMSYRDKKNDFRNL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA