Click here to switch to the map view.

The map label for this gene is ydjC [C]

Identifier: 116871580

GI number: 116871580

Start: 160038

End: 160775

Strand: Direct

Name: ydjC [C]

Synonym: lwe0160

Alternate gene names: 116871580

Gene position: 160038-160775 (Clockwise)

Preceding gene: 116871579

Following gene: 116871581

Centisome position: 5.69

GC content: 36.99

Gene sequence:

>738_bases
ATGAAAATTATTTTTAATGCAGATGATTTTGGAATTAGCCCAGGAGCAGTTTATGGTATTTTAGAATCGTACAAAAAAGG
CGTCGTAAAATCAACTACACTTCTTGCAAATAGCCCAGCGTTTGATTTAGCTGTAGAAGTGGCAAAAGAAAATCCTGGAC
TGGATATTGGTGCGCATTTGACTTTAACATTTGGTTCCCCACTTCTTCAAGGACTAGAAACATTAACTGATGATGACGGA
CGTTTCCGTAAAAACTACACAGCGCTAGAAAACGGTTTAGCGGATGTGGATATGGGAGAAGTAGAACGTGAATTAACCGC
GCAAATCAAGAAGATTTTGGGGGCCGGACTCACTATTTCCCACTTTGATACACATCATTCTATCGAGCCATTAATCTACC
CTATACAACACAAATTAGCTGAAAAATATGGAGTATCCATTAGACGTCATGCAGATGTGTCTGATTTTGGTGCTATTAAA
ACACCTGATTTATTTGAAACAGCTTTTTATGCAGATGGCGTATCTTTTGAAACGATTAAAAAAATAGTGCAAGCGCATAT
TGGAACAAATGATGTAGTGGAAGTAATGACACATCCAGCTTTCATAGATGAAACATTACGTGAAATTTCTAGCTATGTAG
AGCCACGTATCAAAGAAGTTTCCATTTTAACTTCAAGAGAGTTACAAGCTTATTTAGGTCAACAAGAAGTAGAAGTGATT
AGTTTCCGCGATTTATAA

Upstream 100 bases:

>100_bases
TAACGGCTTGCGAGGCTTTTGTGAGGAAGTCTATATGGTTAGACCGTGGAGCGAAAGTGAAAACGAAACTATTAATTAAT
GGATGAGAGGGGTCAAACAA

Downstream 100 bases:

>100_bases
GAATATTGACCTGTCAAAAGAACTTTATTTGGCAGGTTTTTTAATATGTTAAAAGAATAAATGTTGTCATTTTGATAGAA
AACGTTTTATAATAGAGAAA

Product: YdjC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKIIFNADDFGISPGAVYGILESYKKGVVKSTTLLANSPAFDLAVEVAKENPGLDIGAHLTLTFGSPLLQGLETLTDDDG
RFRKNYTALENGLADVDMGEVERELTAQIKKILGAGLTISHFDTHHSIEPLIYPIQHKLAEKYGVSIRRHADVSDFGAIK
TPDLFETAFYADGVSFETIKKIVQAHIGTNDVVEVMTHPAFIDETLREISSYVEPRIKEVSILTSRELQAYLGQQEVEVI
SFRDL

Sequences:

>Translated_245_residues
MKIIFNADDFGISPGAVYGILESYKKGVVKSTTLLANSPAFDLAVEVAKENPGLDIGAHLTLTFGSPLLQGLETLTDDDG
RFRKNYTALENGLADVDMGEVERELTAQIKKILGAGLTISHFDTHHSIEPLIYPIQHKLAEKYGVSIRRHADVSDFGAIK
TPDLFETAFYADGVSFETIKKIVQAHIGTNDVVEVMTHPAFIDETLREISSYVEPRIKEVSILTSRELQAYLGQQEVEVI
SFRDL
>Mature_245_residues
MKIIFNADDFGISPGAVYGILESYKKGVVKSTTLLANSPAFDLAVEVAKENPGLDIGAHLTLTFGSPLLQGLETLTDDDG
RFRKNYTALENGLADVDMGEVERELTAQIKKILGAGLTISHFDTHHSIEPLIYPIQHKLAEKYGVSIRRHADVSDFGAIK
TPDLFETAFYADGVSFETIKKIVQAHIGTNDVVEVMTHPAFIDETLREISSYVEPRIKEVSILTSRELQAYLGQQEVEVI
SFRDL

Specific function: Unknown

COG id: COG3394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0249 family

Homologues:

Organism=Homo sapiens, GI63054868, Length=298, Percent_Identity=25.8389261744966, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1788028, Length=250, Percent_Identity=36, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y160_LISW6 (A0AEZ6)

Other databases:

- EMBL:   AM263198
- RefSeq:   YP_848361.1
- ProteinModelPortal:   A0AEZ6
- SMR:   A0AEZ6
- STRING:   A0AEZ6
- GeneID:   4466335
- GenomeReviews:   AM263198_GR
- KEGG:   lwe:lwe0160
- NMPDR:   fig|386043.6.peg.154
- eggNOG:   COG3394
- HOGENOM:   HBG716502
- OMA:   AVRPFSD
- PhylomeDB:   A0AEZ6
- ProtClustDB:   CLSK563813
- BioCyc:   LWEL386043:LWE0160-MONOMER
- HAMAP:   MF_01246
- InterPro:   IPR002509
- InterPro:   IPR006879
- InterPro:   IPR022948
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF04794 YdjC

EC number: NA

Molecular weight: Translated: 27054; Mature: 27054

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIFNADDFGISPGAVYGILESYKKGVVKSTTLLANSPAFDLAVEVAKENPGLDIGAHL
CEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHEEECCCCHHHHHEECCCCCCCEECCEE
TLTFGSPLLQGLETLTDDDGRFRKNYTALENGLADVDMGEVERELTAQIKKILGAGLTIS
EEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
HFDTHHSIEPLIYPIQHKLAEKYGVSIRRHADVSDFGAIKTPDLFETAFYADGVSFETIK
ECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHCCCCCCCHHHHHHHHCCCCCHHHHH
KIVQAHIGTNDVVEVMTHPAFIDETLREISSYVEPRIKEVSILTSRELQAYLGQQEVEVI
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHEEEE
SFRDL
EECCC
>Mature Secondary Structure
MKIIFNADDFGISPGAVYGILESYKKGVVKSTTLLANSPAFDLAVEVAKENPGLDIGAHL
CEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHEEECCCCHHHHHEECCCCCCCEECCEE
TLTFGSPLLQGLETLTDDDGRFRKNYTALENGLADVDMGEVERELTAQIKKILGAGLTIS
EEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
HFDTHHSIEPLIYPIQHKLAEKYGVSIRRHADVSDFGAIKTPDLFETAFYADGVSFETIK
ECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHCCCCCCCHHHHHHHHCCCCCHHHHH
KIVQAHIGTNDVVEVMTHPAFIDETLREISSYVEPRIKEVSILTSRELQAYLGQQEVEVI
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHEEEE
SFRDL
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA