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The map label for this gene is yabF [H]

Identifier: 116871576

GI number: 116871576

Start: 157173

End: 157748

Strand: Direct

Name: yabF [H]

Synonym: lwe0156

Alternate gene names: 116871576

Gene position: 157173-157748 (Clockwise)

Preceding gene: 116871575

Following gene: 116871577

Centisome position: 5.59

GC content: 39.76

Gene sequence:

>576_bases
TTGAGCGAAAAGCCTATAATACATGAGTTCATTGTTGTGGAAGGTCGTGACGATACAACTGCAATTAATCGTTCGGTCAT
TGCAGATACAATTGAAACGAATGGTTCGGCACTTTCACAAGAAACTATCGAAAAAATTAGACATGCGCAGGAAATTCGTG
GGGTTATTATTTTTACTGATCCAGATTTTCCAGGCGAAAAAATCAGAAAACAAATTGACTCAGCAGTTCCAGGATGTAAG
CACGCATTTATTAATCGTCAAGATGCACTTCCAAAAGCAGGTCGAGGTCTTGGTGTAGAACATGCGAGTAGCGCAAATAT
TCGAGAAGCATTAACGAATTTTCATATTAGCAGTACACCTGTAGAAAAACAATTTATCTCAAAAGATATACTTATGCGCC
TTGGCCTTCTTGGCGGAGCAGGGGCGAAAGATCGTCGTGAAAAACTAGGCAACGCACTTAAAATCGGTTACACAAATGGA
AAACAATTACAAACAAGACTAGAGTCATTTGCCATTAGTGAAGAACAGTTAGTGGCTGCGTGCCAAAAGATTATGCAGGA
GGAAGAGAATGAGTAA

Upstream 100 bases:

>100_bases
ATCGTATAAAAACGAGGCTGACTCATAGGGCCTCGTTTTTTCTTTGCCCAAAATGTGGTATGATGTATTTACTTATTTTA
TAAAAAAGGATGTAGTCACT

Downstream 100 bases:

>100_bases
AGATATCGCAACTCCCGGAAAAACAACAGAAATCTTAAAAAAATATGGTTTCTTATTTAAAAAAAGTCTCGGTCAAAACT
TTTTGATTGATAGTAATATT

Product: primase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSEKPIIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQEIRGVIIFTDPDFPGEKIRKQIDSAVPGCK
HAFINRQDALPKAGRGLGVEHASSANIREALTNFHISSTPVEKQFISKDILMRLGLLGGAGAKDRREKLGNALKIGYTNG
KQLQTRLESFAISEEQLVAACQKIMQEEENE

Sequences:

>Translated_191_residues
MSEKPIIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQEIRGVIIFTDPDFPGEKIRKQIDSAVPGCK
HAFINRQDALPKAGRGLGVEHASSANIREALTNFHISSTPVEKQFISKDILMRLGLLGGAGAKDRREKLGNALKIGYTNG
KQLQTRLESFAISEEQLVAACQKIMQEEENE
>Mature_190_residues
SEKPIIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQEIRGVIIFTDPDFPGEKIRKQIDSAVPGCKH
AFINRQDALPKAGRGLGVEHASSANIREALTNFHISSTPVEKQFISKDILMRLGLLGGAGAKDRREKLGNALKIGYTNGK
QLQTRLESFAISEEQLVAACQKIMQEEENE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21064; Mature: 20933

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKPIIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQEIRGVIIFTD
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEC
PDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHASSANIREALTNFHISSTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
VEKQFISKDILMRLGLLGGAGAKDRREKLGNALKIGYTNGKQLQTRLESFAISEEQLVAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHH
CQKIMQEEENE
HHHHHHHHCCC
>Mature Secondary Structure 
SEKPIIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQEIRGVIIFTD
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEC
PDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHASSANIREALTNFHISSTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
VEKQFISKDILMRLGLLGGAGAKDRREKLGNALKIGYTNGKQLQTRLESFAISEEQLVAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHH
CQKIMQEEENE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]