| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is yoaA [C]
Identifier: 116871553
GI number: 116871553
Start: 131849
End: 134188
Strand: Direct
Name: yoaA [C]
Synonym: lwe0133
Alternate gene names: 116871553
Gene position: 131849-134188 (Clockwise)
Preceding gene: 116871551
Following gene: 116871554
Centisome position: 4.69
GC content: 37.65
Gene sequence:
>2340_bases ATGAGAAATATGCGGATTTCGGTTCGACGTTTAGTGGAATTTGTCCTTAGAAGTGGAAGTATAGATAATCGCATGGCTAG TTCAAATCGTGCTTTAGAAGGAACGAAAATCCATCAACTACTCCAAAAATCAGCTGGAGATGAATATCAAGCCGAAGTAA GTTTAAAATTAGAGCGAGTAGTAGATAATATAGCTTTTTTACTGGAAGGTCGAGCAGATGGAATTATCAAGGGAGAAATT ATAGATGAAATTAAAACGACTGAAACACCAATGGAAGAAATTACGGAAGATTTCCGACCGCTCCACTGGGCGCAACTTAT TTGTTATGGATTTATTCTAGCTGAAACTGCCAAACTTGATAAGGTCACTCTTCAATTGACCTATTACCAAGTGGTGGATG AAGAGATAAAACAATTTCAACGTGTGATGACTCGCTCCGAAATGGCGCTTTTTGTGGATGATTTACTTTCCAAATATGCC GTTTGGGCGAAAATGTCGGCGGCTTGGGAAATGAAGCGAAATAAAACCATTCAAGAACTATCTTTTCCATATAAAAGTTA CAGACGTGGACAAAGAGAACTGGCAATTGCGGTTTACCGGACGGCTATGTCGGGGGAAAGTTTGTTTTGCGAGGCGCCAA CTGGGATTGGTAAAACCATGTCGACCTTATTTCCAGCAATGAAAGCAATGGGCACTGGAAAGATTGACAAGATTTTTTAT TTTACAGCCAAAACAATTACGAGGCAGGTTGCGGAAGATGCACTTATAGAGATGCGACGAAAAGGGTTAGCTGCAAGAAG TGTAACAATCACAGCTAAAGATAAAATTTGTTTTTTAGATGAGCGGAAATGTGAGCCAGACCATTGTCAGTTTGCGCGTG GTTATTATGATCGTTTGAATGAAGCATTGTTTGATATGTTGCAATCTGAGGAAGCAATAACTCGTCCAGTTGTAGAAACA TATGCCCGAAAACATACGCTTTGTCCTTTTGAATTATCGCTCGATGTGGCACTTTTTTGTGATGCGATTATTTGTGATTA TAATTATTTATTTGATCCAGTAATCTATCTGAAACGTTTTTTTGCGGAAGGTCCGGGGAAATACACATTTTTAGTAGATG AAGTGCATAATTTAGTGGATCGTGCGCGCTCTATGTTTTCTGCTACCTTGCGGAAATCACTGATAATGCAGGTGAAACGT GGACTGGACAAAAAATTAAATAAACGTTTATTAAATGCAATAAATGCGATGAACAGAGAAATGATTTCACTCAACAAAAA ACTAACAGAATTAGGAAAAACCGTTTATGTGAATAAAGAAAAGTTGGTTGATTGGAATGAGGCGATATTAAAGTTCACAT TTGTGGCAAAAGAATGGCTACCTCAAAATAATCAGTCAGAATCACAAGCTGATGTGCTAGAACTTTATTTTGAAAGCTTA CGATATGTAGCAATTGCAGAATGTTATGATGAACGCTATGTTACACAAGTGACACGAAGCCATGGAGATTTAGAAATAAA ACAGTTATGTCTCGATCCAGCATTCCTTCTATCAGAAAAATTGAAACTAGGAGACAGCTCGGTTCTTTTTTCGGCTACCC TTAGACCGATAGATTATTATACGAATGTACTTGGCGGTGAGAAAGATACAAGCCGTATGATTTTTTCTTCCCCTTTTAAG CAAAATAATATGCATTTACTTGTGGCAGATTTTATAAGCACGAAATACCAAATGCGAGAAAATAGCTTAGAATCAGTTGT AGATGCACTATTTGCATTGATTTCTGGAAAAAAAGGTAATTATTTATTTTTCTTCCCATCATTTTTGTATTTACAGAATG TATATGAATTATTTAGAGAAAAGTATCCAGAAGTTCAGGTGCAAAAACAAGAAACATCAATGGATGAAGAGCGGCGAGAG CATTTTTTAGAGATGTTCCAAGCAGATAATGAAGAAACATTGGTCGGCTTTTGTGTTTTAGGAGGCGTTTTTTCTGAAGG CGTTGATCTAAGAGGTGATCGCCTAGTTGGAGCGGCTATTGTAGGGGTAGGACTCGCACAGCTTAACTATGAATCAGATT TAATTAAAGATTATTATAACAAATCTATTGGTCGTGGATTTGATTATGCTTACCAAATACCGGGAATGAATAAAGTACTC CAAGCTGTCGGGCGTGTTATTCGAGGGGAAGCAGATCGCGGAGTTGTATTATTAATAGAAGAACGTTTTTCCGCTGAACG ATATAGAGCTTTGTTTCCGGCTCACTGGAATCATGCAAAAACAGTGAAAAATATCCATGAAATCTCCCATGAAGTAAGTG AATTTTGGCAGAATAGCTGA
Upstream 100 bases:
>100_bases TTTTTGTATAAATGGGTGATTTTCGCAGGATAAGTTTTCATACTACAACGAACATCAGTTCTGTGCTATAATTCAAATGG ATTATAGAGGAGGATTGTTG
Downstream 100 bases:
>100_bases TTTTCTAGTAGAATGAAAGTAATTAGTCATTTTGGGAGGAAATTATGTATAAAATTATTGCGATAGATATTGATGGAACG TTATTAAACGACGCGCATAA
Product: helicase c2 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues MRNMRISVRRLVEFVLRSGSIDNRMASSNRALEGTKIHQLLQKSAGDEYQAEVSLKLERVVDNIAFLLEGRADGIIKGEI IDEIKTTETPMEEITEDFRPLHWAQLICYGFILAETAKLDKVTLQLTYYQVVDEEIKQFQRVMTRSEMALFVDDLLSKYA VWAKMSAAWEMKRNKTIQELSFPYKSYRRGQRELAIAVYRTAMSGESLFCEAPTGIGKTMSTLFPAMKAMGTGKIDKIFY FTAKTITRQVAEDALIEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRPVVET YARKHTLCPFELSLDVALFCDAIICDYNYLFDPVIYLKRFFAEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLIMQVKR GLDKKLNKRLLNAINAMNREMISLNKKLTELGKTVYVNKEKLVDWNEAILKFTFVAKEWLPQNNQSESQADVLELYFESL RYVAIAECYDERYVTQVTRSHGDLEIKQLCLDPAFLLSEKLKLGDSSVLFSATLRPIDYYTNVLGGEKDTSRMIFSSPFK QNNMHLLVADFISTKYQMRENSLESVVDALFALISGKKGNYLFFFPSFLYLQNVYELFREKYPEVQVQKQETSMDEERRE HFLEMFQADNEETLVGFCVLGGVFSEGVDLRGDRLVGAAIVGVGLAQLNYESDLIKDYYNKSIGRGFDYAYQIPGMNKVL QAVGRVIRGEADRGVVLLIEERFSAERYRALFPAHWNHAKTVKNIHEISHEVSEFWQNS
Sequences:
>Translated_779_residues MRNMRISVRRLVEFVLRSGSIDNRMASSNRALEGTKIHQLLQKSAGDEYQAEVSLKLERVVDNIAFLLEGRADGIIKGEI IDEIKTTETPMEEITEDFRPLHWAQLICYGFILAETAKLDKVTLQLTYYQVVDEEIKQFQRVMTRSEMALFVDDLLSKYA VWAKMSAAWEMKRNKTIQELSFPYKSYRRGQRELAIAVYRTAMSGESLFCEAPTGIGKTMSTLFPAMKAMGTGKIDKIFY FTAKTITRQVAEDALIEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRPVVET YARKHTLCPFELSLDVALFCDAIICDYNYLFDPVIYLKRFFAEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLIMQVKR GLDKKLNKRLLNAINAMNREMISLNKKLTELGKTVYVNKEKLVDWNEAILKFTFVAKEWLPQNNQSESQADVLELYFESL RYVAIAECYDERYVTQVTRSHGDLEIKQLCLDPAFLLSEKLKLGDSSVLFSATLRPIDYYTNVLGGEKDTSRMIFSSPFK QNNMHLLVADFISTKYQMRENSLESVVDALFALISGKKGNYLFFFPSFLYLQNVYELFREKYPEVQVQKQETSMDEERRE HFLEMFQADNEETLVGFCVLGGVFSEGVDLRGDRLVGAAIVGVGLAQLNYESDLIKDYYNKSIGRGFDYAYQIPGMNKVL QAVGRVIRGEADRGVVLLIEERFSAERYRALFPAHWNHAKTVKNIHEISHEVSEFWQNS >Mature_779_residues MRNMRISVRRLVEFVLRSGSIDNRMASSNRALEGTKIHQLLQKSAGDEYQAEVSLKLERVVDNIAFLLEGRADGIIKGEI IDEIKTTETPMEEITEDFRPLHWAQLICYGFILAETAKLDKVTLQLTYYQVVDEEIKQFQRVMTRSEMALFVDDLLSKYA VWAKMSAAWEMKRNKTIQELSFPYKSYRRGQRELAIAVYRTAMSGESLFCEAPTGIGKTMSTLFPAMKAMGTGKIDKIFY FTAKTITRQVAEDALIEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRPVVET YARKHTLCPFELSLDVALFCDAIICDYNYLFDPVIYLKRFFAEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLIMQVKR GLDKKLNKRLLNAINAMNREMISLNKKLTELGKTVYVNKEKLVDWNEAILKFTFVAKEWLPQNNQSESQADVLELYFESL RYVAIAECYDERYVTQVTRSHGDLEIKQLCLDPAFLLSEKLKLGDSSVLFSATLRPIDYYTNVLGGEKDTSRMIFSSPFK QNNMHLLVADFISTKYQMRENSLESVVDALFALISGKKGNYLFFFPSFLYLQNVYELFREKYPEVQVQKQETSMDEERRE HFLEMFQADNEETLVGFCVLGGVFSEGVDLRGDRLVGAAIVGVGLAQLNYESDLIKDYYNKSIGRGFDYAYQIPGMNKVL QAVGRVIRGEADRGVVLLIEERFSAERYRALFPAHWNHAKTVKNIHEISHEVSEFWQNS
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI17554258, Length=290, Percent_Identity=25.5172413793103, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 89735; Mature: 89735
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNMRISVRRLVEFVLRSGSIDNRMASSNRALEGTKIHQLLQKSAGDEYQAEVSLKLERV CCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHH VDNIAFLLEGRADGIIKGEIIDEIKTTETPMEEITEDFRPLHWAQLICYGFILAETAKLD HHHHHHHHCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC KVTLQLTYYQVVDEEIKQFQRVMTRSEMALFVDDLLSKYAVWAKMSAAWEMKRNKTIQEL EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SFPYKSYRRGQRELAIAVYRTAMSGESLFCEAPTGIGKTMSTLFPAMKAMGTGKIDKIFY CCCHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHEEE FTAKTITRQVAEDALIEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH EALFDMLQSEEAITRPVVETYARKHTLCPFELSLDVALFCDAIICDYNYLFDPVIYLKRF HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHH FAEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLIMQVKRGLDKKLNKRLLNAINAMNRE HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MISLNKKLTELGKTVYVNKEKLVDWNEAILKFTFVAKEWLPQNNQSESQADVLELYFESL HHHHHHHHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH RYVAIAECYDERYVTQVTRSHGDLEIKQLCLDPAFLLSEKLKLGDSSVLFSATLRPIDYY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCHHHHH TNVLGGEKDTSRMIFSSPFKQNNMHLLVADFISTKYQMRENSLESVVDALFALISGKKGN HHHCCCCCCCCCHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC YLFFFPSFLYLQNVYELFREKYPEVQVQKQETSMDEERREHFLEMFQADNEETLVGFCVL EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH GGVFSEGVDLRGDRLVGAAIVGVGLAQLNYESDLIKDYYNKSIGRGFDYAYQIPGMNKVL HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH QAVGRVIRGEADRGVVLLIEERFSAERYRALFPAHWNHAKTVKNIHEISHEVSEFWQNS HHHHHHHCCCCCCCEEEEEHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRNMRISVRRLVEFVLRSGSIDNRMASSNRALEGTKIHQLLQKSAGDEYQAEVSLKLERV CCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHH VDNIAFLLEGRADGIIKGEIIDEIKTTETPMEEITEDFRPLHWAQLICYGFILAETAKLD HHHHHHHHCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC KVTLQLTYYQVVDEEIKQFQRVMTRSEMALFVDDLLSKYAVWAKMSAAWEMKRNKTIQEL EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SFPYKSYRRGQRELAIAVYRTAMSGESLFCEAPTGIGKTMSTLFPAMKAMGTGKIDKIFY CCCHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHEEE FTAKTITRQVAEDALIEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH EALFDMLQSEEAITRPVVETYARKHTLCPFELSLDVALFCDAIICDYNYLFDPVIYLKRF HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHHH FAEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLIMQVKRGLDKKLNKRLLNAINAMNRE HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MISLNKKLTELGKTVYVNKEKLVDWNEAILKFTFVAKEWLPQNNQSESQADVLELYFESL HHHHHHHHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH RYVAIAECYDERYVTQVTRSHGDLEIKQLCLDPAFLLSEKLKLGDSSVLFSATLRPIDYY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCHHHHH TNVLGGEKDTSRMIFSSPFKQNNMHLLVADFISTKYQMRENSLESVVDALFALISGKKGN HHHCCCCCCCCCHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC YLFFFPSFLYLQNVYELFREKYPEVQVQKQETSMDEERREHFLEMFQADNEETLVGFCVL EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH GGVFSEGVDLRGDRLVGAAIVGVGLAQLNYESDLIKDYYNKSIGRGFDYAYQIPGMNKVL HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH QAVGRVIRGEADRGVVLLIEERFSAERYRALFPAHWNHAKTVKNIHEISHEVSEFWQNS HHHHHHHCCCCCCCEEEEEHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]