Click here to switch to the map view.

The map label for this gene is 116871530

Identifier: 116871530

GI number: 116871530

Start: 111357

End: 111779

Strand: Direct

Name: 116871530

Synonym: lwe0110

Alternate gene names: NA

Gene position: 111357-111779 (Clockwise)

Preceding gene: 116871529

Following gene: 116871531

Centisome position: 3.96

GC content: 35.93

Gene sequence:

>423_bases
ATGGACTTTTTTCTAAAACTTGGAATAACAGTTTTTGGCGCGGTGTTTGGATACTTGTTTGGGGATGTGGATTTATTGGT
AAAAGTGCTGGTGTGCTTTATTATAGCTGACTATATCTCTGGGCTACTTGCATCAGGGTATCTAGGGGAACTTAGCAGCA
AAATGGGTTTCAAAGGAATCGCGAAAAAAATTGCTATCTTAATTTTAGTAGCTATTGCGCATCAAATAGATTTGATTCTC
GGAACGCATAATACAACGCGGGATGCAGTTATCTTTTTCTATTTGGCGAATGAGTTGATTTCTATTTTGGAAAATTTTGT
TCGAATGGGGATGAAAGTCCCGGAAATATTGAAAAATTTAATTTTAATTTTTGATGCAAAAGCAGGAGATGAGGAGGAAA
AGCATGACAAAAATATGGATTGA

Upstream 100 bases:

>100_bases
AGAATTAAAAAAAGAGCTGTGCTTGAACTGGCCTCAATTATGGGGATTTTGGTTAGGAAATGACGTGGATTTTGGTGAAA
AAATTGAAAGGAGGCGTTAT

Downstream 100 bases:

>100_bases
TGCAGGTCATGGTGGGAAAGATTCTGGCGCAGTTGGAAACGGGCTTGTCGAAAAAGATTGGGTGCTGACTGTAGCGAAAC
AAATTCAAAATGAATTGATG

Product: holin, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDFFLKLGITVFGAVFGYLFGDVDLLVKVLVCFIIADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLIL
GTHNTTRDAVIFFYLANELISILENFVRMGMKVPEILKNLILIFDAKAGDEEEKHDKNMD

Sequences:

>Translated_140_residues
MDFFLKLGITVFGAVFGYLFGDVDLLVKVLVCFIIADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLIL
GTHNTTRDAVIFFYLANELISILENFVRMGMKVPEILKNLILIFDAKAGDEEEKHDKNMD
>Mature_140_residues
MDFFLKLGITVFGAVFGYLFGDVDLLVKVLVCFIIADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLIL
GTHNTTRDAVIFFYLANELISILENFVRMGMKVPEILKNLILIFDAKAGDEEEKHDKNMD

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 15518; Mature: 15518

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFLKLGITVFGAVFGYLFGDVDLLVKVLVCFIIADYISGLLASGYLGELSSKMGFKGI
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEILKNL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILIFDAKAGDEEEKHDKNMD
HHHHCCCCCCCHHHCCCCCC
>Mature Secondary Structure
MDFFLKLGITVFGAVFGYLFGDVDLLVKVLVCFIIADYISGLLASGYLGELSSKMGFKGI
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEILKNL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILIFDAKAGDEEEKHDKNMD
HHHHCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]