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The map label for this gene is rssA [H]

Identifier: 116696480

GI number: 116696480

Start: 2869640

End: 2871934

Strand: Direct

Name: rssA [H]

Synonym: H16_B2544

Alternate gene names: 116696480

Gene position: 2869640-2871934 (Clockwise)

Preceding gene: 116696474

Following gene: 116696481

Centisome position: 98.53

GC content: 68.37

Gene sequence:

>2295_bases
ATGAAGGCAGCCTCATTCCATTGCTTGCACAAACTGCTCGTGCCGGCGGTCCTGGCACTGGCTGCGGGCTCGGTCCTGGC
CGCTGAGCCGGCATCCATGCCAACGGCCTCGGGCATCGAGCCGCCCGCAGACCAGGCCGCGGCAGCCACGCCGCAGGTGG
CCGCGGGCGCGCGCCCCCGCATCTGCCTGGTGCTCTCGGGCGGCGGCGCGCGCGGCGCGGCCCATATCGGCGTGCTCAAG
GTGCTGGAGGCGATGCGCATCCCGGTCGACTGCATCGCAGGCACCAGCATGGGTTCGCTGGTGGGGGGCGCCTATGCCAC
CGGCATGGCTCCCGCCGAAATGGAGCGGCTGGTCGGCGGCCTGAGCACCGACAGGATCTTCAAGGAACGCCCGCCGCGCC
AGGACCTGACCATCCGGCGCAAGCAGGACGATTTCACCAACCTGTTCACGCCCGAGATCGGAGTGCAGGCCAGCGGCCTC
TTGCTGCCCAAGGGCGCGGTCTCGGGCGTGCAGTTGGAGACCGTGCTGCGCCAGCTGGCCAAAGTGCCCGGCTACCGGGA
CTTCGACCAGTTTCCGATTCCCTACCGCGCTGTCGCCACGGACCTGGTGGCAGGCACGCCGGTGGTGTTCAGCCAGGGCG
AGCTGGCCAACGTGATGCGCGCCAGCATGTCGGTGCCGGGCGCGGTGGCGCCGGCCGAGTACGAGGGGCGGCTGCTGGTC
GACGGCGGCCTGACCGACAACCTGCCGGTGGACGTGGCGCGCAGGATGGGCGCCGATATCGTGATCGCGGTGAACCTGGG
CACGCCGCTGATGAGGCGTGAGGAACTGACCTCGATCATCGGCGTGACCGGCCAGATGCTCAATATCCTGACCGAGCAGA
ACGTGCGTGCGTCGCTGGCCTCGCTGCGGCCCACCGACGTGCTGATCGAGCCGGCGCTGGGCGATTTTTCCGCGACCGAC
TTCGACCATCTGCCGGCAACTATCCCCATCGGCGAGGCTGCCGCGCGCAAGGTCGCCGACCGCCTCGCGCCGCTGGCGCT
GCCGCCGGCGCAATATGCACAACTGCGCGCCAGGCAACAGGCGGTGCAGCCGCCTGACACCCGCCCGGTCGATGAGATCC
GGCTGGCGCCGCTGCAGCGCGTCAACCCGGACTACGCCACCGCGGTGATGGAAACCAAGCCCGGGCAGCCGGTCGACCAG
GCCACGCTGGACCAGGACATGCGCCGCCTGTTCGGCACCGGCGACTTCGAGCACGTCAACTACGGCATCCTGGAAGAGCC
CGGCAAGCGCGTGCTGGCGGTCAATGCGGTGGAAAAATCCTACGGTCCCGACTACCTGCGCTTCGGGCTCGGGCTGAGCT
CGGATTTCCGCGGCGATGCCTACTTCAACCTGGTGGGCAGCTACCGGCGCACCTGGCTCAATGCGCTTGGCGCCGAATGG
CGCACCGATGCGCAGGTGGGCCAGACCTCGTCGCTGATCAGTGAGTTCTACCAGCCTCTGGATACGCGCCAGTATTTCTT
TATCGCGCCGCGCATCGAGCTGGAGCGGCGCCCGGTCAATGTCTTCCAGGGCAGCACGCGCATCGCCACCTATGACCTGC
GCCGCTTTGACGTCGCGCTGGACGCGGGCAGCCAGTTCACCAAGTACGGCGAGCTGCGCGTGGGCTTGCAGACCGGCGCG
GAACACGCCACGCTGAGCACCGGCCCGGAGTCGCTGTCGCCAGGCCCGGGCAATATCCGGCGCGGCGCCATCACCGGGCG
GCTCATCTTCGACCAGCTCGACAGCGTCGACTTCCCGCGCTTCGGCTATGCGGCCCGGTTTCACATCTACGGCTCGCAGC
CGGGGCTGGGCGCCGACCAGGCTTATGTCAAGGCGCAGGCGGACGGCATCTATGCCCACTCGTTCGGCGACAACACGGTC
TCGCTGGCCTTCAAGGTCGGCAGCAATATCGGCGGCAAGCCGTTGCCGCGCTATGACCTGTTCCAGTGGGGCGGCTTCCT
GCAGCAATCCGGTTATGCCACCGGGCAACTGCTGGGCGGCAACCTGCAGTTTGCGCGGCTGGTCTACTACAACAAGCTGG
CGCGCCAGACCCTGCTGCAAGGCGTGTACGCAGGCTTTTCGCTGGAGGCGGGCCGCATGGGCGACCCGCTGGTGCCGGGG
AGCCCGACCGGGCTGCTCAAGTCCGGCTCGGTCTTCCTGGCGCTGGACAGTCCGCTGGGCCCGCTTTACCTGGCCTATGG
CCGCGCCGCCGCAGGCACATACAGCTTTTACCTGTTCCTGGGTAAACCCTTCTGA

Upstream 100 bases:

>100_bases
ATGCCGCATTTTGCCCGAAGATAGCCGGACCTCCCCGCCCGGCTGATGCCGGGCCGGGCTACTGCCGCCCGTTGCGGCCG
ACAGCGAACCCCACGGTGCC

Downstream 100 bases:

>100_bases
GCCGGTCAGCATAAGCATCCAGAAAATGTGAGCCGGCCGCACCCTACCAAAGTTGTATGTAATGTCTTAATTCAAATGTC
TATACTTTTTACGTCACCAA

Product: putative periplasmic esterase or lipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 764

Protein sequence:

>764_residues
MKAASFHCLHKLLVPAVLALAAGSVLAAEPASMPTASGIEPPADQAAAATPQVAAGARPRICLVLSGGGARGAAHIGVLK
VLEAMRIPVDCIAGTSMGSLVGGAYATGMAPAEMERLVGGLSTDRIFKERPPRQDLTIRRKQDDFTNLFTPEIGVQASGL
LLPKGAVSGVQLETVLRQLAKVPGYRDFDQFPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPAEYEGRLLV
DGGLTDNLPVDVARRMGADIVIAVNLGTPLMRREELTSIIGVTGQMLNILTEQNVRASLASLRPTDVLIEPALGDFSATD
FDHLPATIPIGEAAARKVADRLAPLALPPAQYAQLRARQQAVQPPDTRPVDEIRLAPLQRVNPDYATAVMETKPGQPVDQ
ATLDQDMRRLFGTGDFEHVNYGILEEPGKRVLAVNAVEKSYGPDYLRFGLGLSSDFRGDAYFNLVGSYRRTWLNALGAEW
RTDAQVGQTSSLISEFYQPLDTRQYFFIAPRIELERRPVNVFQGSTRIATYDLRRFDVALDAGSQFTKYGELRVGLQTGA
EHATLSTGPESLSPGPGNIRRGAITGRLIFDQLDSVDFPRFGYAARFHIYGSQPGLGADQAYVKAQADGIYAHSFGDNTV
SLAFKVGSNIGGKPLPRYDLFQWGGFLQQSGYATGQLLGGNLQFARLVYYNKLARQTLLQGVYAGFSLEAGRMGDPLVPG
SPTGLLKSGSVFLALDSPLGPLYLAYGRAAAGTYSFYLFLGKPF

Sequences:

>Translated_764_residues
MKAASFHCLHKLLVPAVLALAAGSVLAAEPASMPTASGIEPPADQAAAATPQVAAGARPRICLVLSGGGARGAAHIGVLK
VLEAMRIPVDCIAGTSMGSLVGGAYATGMAPAEMERLVGGLSTDRIFKERPPRQDLTIRRKQDDFTNLFTPEIGVQASGL
LLPKGAVSGVQLETVLRQLAKVPGYRDFDQFPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPAEYEGRLLV
DGGLTDNLPVDVARRMGADIVIAVNLGTPLMRREELTSIIGVTGQMLNILTEQNVRASLASLRPTDVLIEPALGDFSATD
FDHLPATIPIGEAAARKVADRLAPLALPPAQYAQLRARQQAVQPPDTRPVDEIRLAPLQRVNPDYATAVMETKPGQPVDQ
ATLDQDMRRLFGTGDFEHVNYGILEEPGKRVLAVNAVEKSYGPDYLRFGLGLSSDFRGDAYFNLVGSYRRTWLNALGAEW
RTDAQVGQTSSLISEFYQPLDTRQYFFIAPRIELERRPVNVFQGSTRIATYDLRRFDVALDAGSQFTKYGELRVGLQTGA
EHATLSTGPESLSPGPGNIRRGAITGRLIFDQLDSVDFPRFGYAARFHIYGSQPGLGADQAYVKAQADGIYAHSFGDNTV
SLAFKVGSNIGGKPLPRYDLFQWGGFLQQSGYATGQLLGGNLQFARLVYYNKLARQTLLQGVYAGFSLEAGRMGDPLVPG
SPTGLLKSGSVFLALDSPLGPLYLAYGRAAAGTYSFYLFLGKPF
>Mature_764_residues
MKAASFHCLHKLLVPAVLALAAGSVLAAEPASMPTASGIEPPADQAAAATPQVAAGARPRICLVLSGGGARGAAHIGVLK
VLEAMRIPVDCIAGTSMGSLVGGAYATGMAPAEMERLVGGLSTDRIFKERPPRQDLTIRRKQDDFTNLFTPEIGVQASGL
LLPKGAVSGVQLETVLRQLAKVPGYRDFDQFPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPAEYEGRLLV
DGGLTDNLPVDVARRMGADIVIAVNLGTPLMRREELTSIIGVTGQMLNILTEQNVRASLASLRPTDVLIEPALGDFSATD
FDHLPATIPIGEAAARKVADRLAPLALPPAQYAQLRARQQAVQPPDTRPVDEIRLAPLQRVNPDYATAVMETKPGQPVDQ
ATLDQDMRRLFGTGDFEHVNYGILEEPGKRVLAVNAVEKSYGPDYLRFGLGLSSDFRGDAYFNLVGSYRRTWLNALGAEW
RTDAQVGQTSSLISEFYQPLDTRQYFFIAPRIELERRPVNVFQGSTRIATYDLRRFDVALDAGSQFTKYGELRVGLQTGA
EHATLSTGPESLSPGPGNIRRGAITGRLIFDQLDSVDFPRFGYAARFHIYGSQPGLGADQAYVKAQADGIYAHSFGDNTV
SLAFKVGSNIGGKPLPRYDLFQWGGFLQQSGYATGQLLGGNLQFARLVYYNKLARQTLLQGVYAGFSLEAGRMGDPLVPG
SPTGLLKSGSVFLALDSPLGPLYLAYGRAAAGTYSFYLFLGKPF

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=309, Percent_Identity=30.0970873786408, Blast_Score=108, Evalue=3e-23,
Organism=Homo sapiens, GI148727290, Length=309, Percent_Identity=30.0970873786408, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI260656041, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI260656039, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI116256487, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI260656043, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI260656037, Length=210, Percent_Identity=35.7142857142857, Blast_Score=105, Evalue=2e-22,
Organism=Escherichia coli, GI226510936, Length=329, Percent_Identity=29.1793313069909, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71997299, Length=296, Percent_Identity=25.3378378378378, Blast_Score=71, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=296, Percent_Identity=25.3378378378378, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193204778, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 81925; Mature: 81925

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAASFHCLHKLLVPAVLALAAGSVLAAEPASMPTASGIEPPADQAAAATPQVAAGARPR
CCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCC
ICLVLSGGGARGAAHIGVLKVLEAMRIPVDCIAGTSMGSLVGGAYATGMAPAEMERLVGG
EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCHHHCCCCHHHHHHHHCC
LSTDRIFKERPPRQDLTIRRKQDDFTNLFTPEIGVQASGLLLPKGAVSGVQLETVLRQLA
CCHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHH
KVPGYRDFDQFPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPAEYEGRLLV
HCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEE
DGGLTDNLPVDVARRMGADIVIAVNLGTPLMRREELTSIIGVTGQMLNILTEQNVRASLA
ECCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
SLRPTDVLIEPALGDFSATDFDHLPATIPIGEAAARKVADRLAPLALPPAQYAQLRARQQ
HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AVQPPDTRPVDEIRLAPLQRVNPDYATAVMETKPGQPVDQATLDQDMRRLFGTGDFEHVN
HCCCCCCCCHHHHHHCCHHHCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC
YGILEEPGKRVLAVNAVEKSYGPDYLRFGLGLSSDFRGDAYFNLVGSYRRTWLNALGAEW
CCCCCCCCCEEEEEEEHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
RTDAQVGQTSSLISEFYQPLDTRQYFFIAPRIELERRPVNVFQGSTRIATYDLRRFDVAL
CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCEECCCCEEEEEEEEEEEEEE
DAGSQFTKYGELRVGLQTGAEHATLSTGPESLSPGPGNIRRGAITGRLIFDQLDSVDFPR
CCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCEECEEEHHHHHHHHCCCCCCC
FGYAARFHIYGSQPGLGADQAYVKAQADGIYAHSFGDNTVSLAFKVGSNIGGKPLPRYDL
CCCEEEEEEECCCCCCCCCHHEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCHH
FQWGGFLQQSGYATGQLLGGNLQFARLVYYNKLARQTLLQGVYAGFSLEAGRMGDPLVPG
HHHCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
SPTGLLKSGSVFLALDSPLGPLYLAYGRAAAGTYSFYLFLGKPF
CCCCCEECCCEEEEECCCCCCEEEECCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKAASFHCLHKLLVPAVLALAAGSVLAAEPASMPTASGIEPPADQAAAATPQVAAGARPR
CCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCC
ICLVLSGGGARGAAHIGVLKVLEAMRIPVDCIAGTSMGSLVGGAYATGMAPAEMERLVGG
EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCHHHCCCCHHHHHHHHCC
LSTDRIFKERPPRQDLTIRRKQDDFTNLFTPEIGVQASGLLLPKGAVSGVQLETVLRQLA
CCHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHH
KVPGYRDFDQFPIPYRAVATDLVAGTPVVFSQGELANVMRASMSVPGAVAPAEYEGRLLV
HCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEE
DGGLTDNLPVDVARRMGADIVIAVNLGTPLMRREELTSIIGVTGQMLNILTEQNVRASLA
ECCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
SLRPTDVLIEPALGDFSATDFDHLPATIPIGEAAARKVADRLAPLALPPAQYAQLRARQQ
HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AVQPPDTRPVDEIRLAPLQRVNPDYATAVMETKPGQPVDQATLDQDMRRLFGTGDFEHVN
HCCCCCCCCHHHHHHCCHHHCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC
YGILEEPGKRVLAVNAVEKSYGPDYLRFGLGLSSDFRGDAYFNLVGSYRRTWLNALGAEW
CCCCCCCCCEEEEEEEHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
RTDAQVGQTSSLISEFYQPLDTRQYFFIAPRIELERRPVNVFQGSTRIATYDLRRFDVAL
CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCEECCCCEEEEEEEEEEEEEE
DAGSQFTKYGELRVGLQTGAEHATLSTGPESLSPGPGNIRRGAITGRLIFDQLDSVDFPR
CCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCEECEEEHHHHHHHHCCCCCCC
FGYAARFHIYGSQPGLGADQAYVKAQADGIYAHSFGDNTVSLAFKVGSNIGGKPLPRYDL
CCCEEEEEEECCCCCCCCCHHEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCHH
FQWGGFLQQSGYATGQLLGGNLQFARLVYYNKLARQTLLQGVYAGFSLEAGRMGDPLVPG
HHHCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
SPTGLLKSGSVFLALDSPLGPLYLAYGRAAAGTYSFYLFLGKPF
CCCCCEECCCEEEEECCCCCCEEEECCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]