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The map label for this gene is nirS [H]

Identifier: 116696213

GI number: 116696213

Start: 2576786

End: 2578450

Strand: Direct

Name: nirS [H]

Synonym: H16_B2277

Alternate gene names: 116696213

Gene position: 2576786-2578450 (Clockwise)

Preceding gene: 116696212

Following gene: 116696214

Centisome position: 88.47

GC content: 64.32

Gene sequence:

>1665_bases
ATGAAAGCAAAAAACTGGCTGTACCCGGCAATCGCGGCATTGCCGCTCTCACTCTGGCTCGGGCTGCCACATGCAGCCAC
CAAGGCAGAACCGAAGGCGGAACCGAAAGCCGCCATCCCCACCCTCACTGCCGCTGAGTTCGACCACGCCCGGCAGATCT
ACTTCGAGCGCTGCGCCGGCTGTCACGGCGTGCTGCGCAAGGGCGCGACCGGCAAGTCGCTGACGCCGGACATCACCCGC
GCACGCGGCACCGAGTACCTGAAGACCTTCATCAAGTATGGCAGCCCCGCCGGCATGCCGAACTGGGGCACCTCGGGCGA
TCTTACTGACCCGGAAGTCGACCTGATGGCGCGCTATATCCAGCTCGACCCGCCGACCCCGCCCGAATACTCGCTGGCCG
ATATCGAGAAAAGCCGCAAGGACATCCTGCCGGTGGCCCAGCGTCCGACAAAGAAGATGAACCAGTACAACCTGGACAAC
CTCTTCTCGGTGACGCTGCGCGATGCCGGCGAGGTCGCGCTGATCGACGGCGACAGCAAGCAGATCATCAATATCGTCAA
GACCGGCTACGCGGTGCATATCTCGCGCATGTCGGCGTCCGGGCGCTACCTGTACGTGATCGGCCGCGACGCGCGGCTGG
ACCTGATCGACCTGTGGCTGCCCAAGCCCGATATCGTCGCGGAAGTGAAGGTCGGCATGGAGGCGCGCTCGGTCGAGACC
TCCAAGTACAAGGGCTATGAAGACAAGTACGCCGTGGCCGGCTCCTACTGGCCGCCGCAGTACGTGATCATGGAAGGCGA
CACGCTCAAGCCGCTCAAGGTGGTCTCCACGCGCGGCATGACCGTGGACAACGAATACCACCCCGAGCCGCGCGTGGCGG
CCATCGTCGCCAGCCATTTCCATCCGGAGTTCGTGATCAACGCCAAGGAGACCGGCAAGATCCTGATGGTCAACTACTCG
GACTTGTCCAACCTGAAGACCACCACCATCGATTCGGCCAAGTTCCTGCATGACGGCGGCTTCGACGCCACCGGCCGCTA
CTTCCTGGTGGCCGCCAATGCGTCCGACAAGATTGCCGTGGTCGACACCAAGGAAGACAAGCTGGCCGCGCTGATCGACG
TGGGCAAGACCCCGCATCCGGGGCGCGGCGCCAACTTCATGCATCCGAAGTTGGGCCCGGTCTGGGCCACCAGCCACCTT
GGCGACGAGACCATCAGCCTGATCGGCACCGACCCGGCCGGACACCCGGCGCAGGCGTGGAAGGTGGTGCAGACCATCAA
GGGCCAGGGCGGCGGCTCACTCTTCATCAAGACCCACCCGAAGTCGTCCAACCTGTGGGTCGACACGCCGCTGAACCCTG
ACGCCAAGCTCAACCAGTCGGTGGCGGTGTTCGACACGCGCAACCTGGAAGCCGGCTACAAGGTGCTGCCGATCGCCGAC
TGGGCCGGCCTGAAGGGCGCGGGCGCCAGGCGCGTGGTGCAGGCCGAGTACAACAAGGCCGGCGACGAGGTCTGGTTCTC
GGTCTGGGGCACCAAGGACGGCGAGTCCGCGCTGGTGGTGGTCGACGACAAGACCCGCACGCTCAAGACCGTGATCAAGG
ACAAGCGCCTGATCACCCCGACCGGCAAGTTCAACGCCTATAACACGCAGCACGACGTGTACTGA

Upstream 100 bases:

>100_bases
TCGTCAGTGTGTCCGCATGATTTCCACACGACGACAGGTGCCCGCCACGCAGGCATGGGCACCGCGAAACAGCTTTCCTC
ACCGCTGATCCACGGCACCC

Downstream 100 bases:

>100_bases
GCCGGCGCCACCATGCGTAATCACATCGCCTGGCGGCGCGCTGCGCTGGCGGGGCTGGCAGCGGCCTTGCTGGGCGCAGC
GCCCGGCGCGGCGGCCCAGC

Product: cytochrome cd1 nitrite reductase (NirS)

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MKAKNWLYPAIAALPLSLWLGLPHAATKAEPKAEPKAAIPTLTAAEFDHARQIYFERCAGCHGVLRKGATGKSLTPDITR
ARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEYSLADIEKSRKDILPVAQRPTKKMNQYNLDN
LFSVTLRDAGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLDLIDLWLPKPDIVAEVKVGMEARSVET
SKYKGYEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVAAIVASHFHPEFVINAKETGKILMVNYS
DLSNLKTTTIDSAKFLHDGGFDATGRYFLVAANASDKIAVVDTKEDKLAALIDVGKTPHPGRGANFMHPKLGPVWATSHL
GDETISLIGTDPAGHPAQAWKVVQTIKGQGGGSLFIKTHPKSSNLWVDTPLNPDAKLNQSVAVFDTRNLEAGYKVLPIAD
WAGLKGAGARRVVQAEYNKAGDEVWFSVWGTKDGESALVVVDDKTRTLKTVIKDKRLITPTGKFNAYNTQHDVY

Sequences:

>Translated_554_residues
MKAKNWLYPAIAALPLSLWLGLPHAATKAEPKAEPKAAIPTLTAAEFDHARQIYFERCAGCHGVLRKGATGKSLTPDITR
ARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEYSLADIEKSRKDILPVAQRPTKKMNQYNLDN
LFSVTLRDAGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLDLIDLWLPKPDIVAEVKVGMEARSVET
SKYKGYEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVAAIVASHFHPEFVINAKETGKILMVNYS
DLSNLKTTTIDSAKFLHDGGFDATGRYFLVAANASDKIAVVDTKEDKLAALIDVGKTPHPGRGANFMHPKLGPVWATSHL
GDETISLIGTDPAGHPAQAWKVVQTIKGQGGGSLFIKTHPKSSNLWVDTPLNPDAKLNQSVAVFDTRNLEAGYKVLPIAD
WAGLKGAGARRVVQAEYNKAGDEVWFSVWGTKDGESALVVVDDKTRTLKTVIKDKRLITPTGKFNAYNTQHDVY
>Mature_554_residues
MKAKNWLYPAIAALPLSLWLGLPHAATKAEPKAEPKAAIPTLTAAEFDHARQIYFERCAGCHGVLRKGATGKSLTPDITR
ARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEYSLADIEKSRKDILPVAQRPTKKMNQYNLDN
LFSVTLRDAGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLDLIDLWLPKPDIVAEVKVGMEARSVET
SKYKGYEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVAAIVASHFHPEFVINAKETGKILMVNYS
DLSNLKTTTIDSAKFLHDGGFDATGRYFLVAANASDKIAVVDTKEDKLAALIDVGKTPHPGRGANFMHPKLGPVWATSHL
GDETISLIGTDPAGHPAQAWKVVQTIKGQGGGSLFIKTHPKSSNLWVDTPLNPDAKLNQSVAVFDTRNLEAGYKVLPIAD
WAGLKGAGARRVVQAEYNKAGDEVWFSVWGTKDGESALVVVDDKTRTLKTVIKDKRLITPTGKFNAYNTQHDVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 60758; Mature: 60758

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKNWLYPAIAALPLSLWLGLPHAATKAEPKAEPKAAIPTLTAAEFDHARQIYFERCAG
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCC
CHGVLRKGATGKSLTPDITRARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYI
HHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEE
QLDPPTPPEYSLADIEKSRKDILPVAQRPTKKMNQYNLDNLFSVTLRDAGEVALIDGDSK
ECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCHH
QIINIVKTGYAVHISRMSASGRYLYVIGRDARLDLIDLWLPKPDIVAEVKVGMEARSVET
HHHHHHHCCEEEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCHHCCCH
SKYKGYEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVAAIVASHF
HHCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCHHEEEEHHCC
HPEFVINAKETGKILMVNYSDLSNLKTTTIDSAKFLHDGGFDATGRYFLVAANASDKIAV
CCEEEEECCCCCCEEEEECCCCCCCEEEEECCHHHEECCCCCCCCCEEEEEECCCCEEEE
VDTKEDKLAALIDVGKTPHPGRGANFMHPKLGPVWATSHLGDETISLIGTDPAGHPAQAW
EECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHH
KVVQTIKGQGGGSLFIKTHPKSSNLWVDTPLNPDAKLNQSVAVFDTRNLEAGYKVLPIAD
HHHHHHCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEECC
WAGLKGAGARRVVQAEYNKAGDEVWFSVWGTKDGESALVVVDDKTRTLKTVIKDKRLITP
CCCCCCCCCCEEEEEHHCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHCCEEECC
TGKFNAYNTQHDVY
CCCCCCCCCCCCCC
>Mature Secondary Structure
MKAKNWLYPAIAALPLSLWLGLPHAATKAEPKAEPKAAIPTLTAAEFDHARQIYFERCAG
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCC
CHGVLRKGATGKSLTPDITRARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYI
HHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEE
QLDPPTPPEYSLADIEKSRKDILPVAQRPTKKMNQYNLDNLFSVTLRDAGEVALIDGDSK
ECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCHH
QIINIVKTGYAVHISRMSASGRYLYVIGRDARLDLIDLWLPKPDIVAEVKVGMEARSVET
HHHHHHHCCEEEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCHHCCCH
SKYKGYEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVAAIVASHF
HHCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCHHEEEEHHCC
HPEFVINAKETGKILMVNYSDLSNLKTTTIDSAKFLHDGGFDATGRYFLVAANASDKIAV
CCEEEEECCCCCCEEEEECCCCCCCEEEEECCHHHEECCCCCCCCCEEEEEECCCCEEEE
VDTKEDKLAALIDVGKTPHPGRGANFMHPKLGPVWATSHLGDETISLIGTDPAGHPAQAW
EECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHH
KVVQTIKGQGGGSLFIKTHPKSSNLWVDTPLNPDAKLNQSVAVFDTRNLEAGYKVLPIAD
HHHHHHCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEECC
WAGLKGAGARRVVQAEYNKAGDEVWFSVWGTKDGESALVVVDDKTRTLKTVIKDKRLITP
CCCCCCCCCCEEEEEHHCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHCCEEECC
TGKFNAYNTQHDVY
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2506077; 10984043; 2155133; 2152881; 9331415; 9760233; 10329702; 11226222; 11563915 [H]