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The map label for this gene is amaB [H]

Identifier: 116695950

GI number: 116695950

Start: 2271966

End: 2273282

Strand: Direct

Name: amaB [H]

Synonym: H16_B2014

Alternate gene names: 116695950

Gene position: 2271966-2273282 (Clockwise)

Preceding gene: 116695949

Following gene: 116695951

Centisome position: 78.01

GC content: 70.08

Gene sequence:

>1317_bases
TTGACCGTATCGAACCCGCCCCCCCTCGCCAACGCACAAGCCATTGCCGAACGCGCACAGGATCATGTGGGCGCCGGGCG
CCTGGCCGCATCGCTGGCAGCCCTGGCCAGCTTTGGCCTGCGCCACGACGGCGGCGTTTCCCGCGAAACACTGACCGCGA
CCGACCTGGCCGCCCGGCGCCACCTGATCGACCAGGCACGCGCGCTGGGCTGCACCGTCGGCATCGACGATTGCGGCAAC
CTGTTCTTCCGCCGCCCCGGCCGCGAAGACCTGCCGCCGGTGCTGACCGGCAGCCACGCCGATACCCAGCCGGTGGGCGG
CAAGTACGACGGCGCGTACGGCGTGCTGGCCGGCCTGGAAGTGATTGCCGCGCTCAACGCGGCCGGCATCGAGACCTTGC
GCCCCATCGAGGTCGTGTCCTGGACCAACGAGGAAGGCAGCCGCTTCGGTCCCGGCGCGATGGGGTCGAGCGCTTTCGTC
GAACCCGCCCGGCTGGCAGGCTATCGCGACGTGGCTGACGCCGCCGGCATTCGCTTCGGCGAGGCGCTCGATGCCGCGCT
CGCGGAAAGCCACGATGTCACCAGAGTGCCGATGGCGCGGCCCATGGCGGCATGCGTCGAACTGCACATCGAACAGGGGC
CGGTGCTGGAAGGCGCAAATGTGCCGCTGGGCGTGGTCACCGGCATCCAGGCGGTGCGCTGGTTCCGCGTGGAATGCACG
GGTACGATGGCCCATGCCGGCACCACGCCGATGGCGGTACGATGCGATGCGATGGCCGCGGCCGTGGCCATCGCGCAAGA
CCTGTACGCGCTGGCGCCGCGCCATGCGGCCACCCCCGGCACTCCTGAACTGCGCCTGACGCTGGGCCGCTGGAGCGTGG
CGCCGAACTCGGTCAACACCATTCCCGGCCACGTCACGTTCACGGTCGATATGCGCTGCCTGGACGACGCCGCGCTTGAC
CGCGCCGAAGCGGCACTGCGCGCGGTGTGCGTCAGGCACGCACATGCGCCCGAAGCGGTCACGGTCACGCGCTTCTTCCA
TCGCGAGCCGACGCATTTCCCCGAGGCCATGCTGGGCACCATCGAGCGCGCCTGCGCGCGTGCCAGCCGCAACGCCGGCC
GCGCGCTGCCGGTGCGGCTGACCTCCGGCGCGTTCCACGACGCCATGTACCTGGCCGACCATTGCCCCACGGCGATGATC
TTCGTGCCAAGCAAAGGGGGCATCAGCCACAATGCCGCCGAAGATACGGAAGGCGCCGATCTGTTCCTTGGAGCCCAGGC
ACTGGCTTACACTGTCGCCGAACTGGCCAGCCGCTGA

Upstream 100 bases:

>100_bases
CGTGACGGGGCCGCGCCATGCCGATGCCCGCGTGCTCGGCATGGCTCATCGCCTTGAGCAGGCGCTTGGCGCCAGCCTTG
CCTGATATCTGGAGACCAAA

Downstream 100 bases:

>100_bases
ACGCATTGACGTACGGCGCCTGGTGGCCGACCCAAGTCCAACCAATTCCGAGCCTGCATGGCAAAGACCGAGCAACCCAC
ACCTGAAGCGGCCGACAGCA

Product: acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MTVSNPPPLANAQAIAERAQDHVGAGRLAASLAALASFGLRHDGGVSRETLTATDLAARRHLIDQARALGCTVGIDDCGN
LFFRRPGREDLPPVLTGSHADTQPVGGKYDGAYGVLAGLEVIAALNAAGIETLRPIEVVSWTNEEGSRFGPGAMGSSAFV
EPARLAGYRDVADAAGIRFGEALDAALAESHDVTRVPMARPMAACVELHIEQGPVLEGANVPLGVVTGIQAVRWFRVECT
GTMAHAGTTPMAVRCDAMAAAVAIAQDLYALAPRHAATPGTPELRLTLGRWSVAPNSVNTIPGHVTFTVDMRCLDDAALD
RAEAALRAVCVRHAHAPEAVTVTRFFHREPTHFPEAMLGTIERACARASRNAGRALPVRLTSGAFHDAMYLADHCPTAMI
FVPSKGGISHNAAEDTEGADLFLGAQALAYTVAELASR

Sequences:

>Translated_438_residues
MTVSNPPPLANAQAIAERAQDHVGAGRLAASLAALASFGLRHDGGVSRETLTATDLAARRHLIDQARALGCTVGIDDCGN
LFFRRPGREDLPPVLTGSHADTQPVGGKYDGAYGVLAGLEVIAALNAAGIETLRPIEVVSWTNEEGSRFGPGAMGSSAFV
EPARLAGYRDVADAAGIRFGEALDAALAESHDVTRVPMARPMAACVELHIEQGPVLEGANVPLGVVTGIQAVRWFRVECT
GTMAHAGTTPMAVRCDAMAAAVAIAQDLYALAPRHAATPGTPELRLTLGRWSVAPNSVNTIPGHVTFTVDMRCLDDAALD
RAEAALRAVCVRHAHAPEAVTVTRFFHREPTHFPEAMLGTIERACARASRNAGRALPVRLTSGAFHDAMYLADHCPTAMI
FVPSKGGISHNAAEDTEGADLFLGAQALAYTVAELASR
>Mature_437_residues
TVSNPPPLANAQAIAERAQDHVGAGRLAASLAALASFGLRHDGGVSRETLTATDLAARRHLIDQARALGCTVGIDDCGNL
FFRRPGREDLPPVLTGSHADTQPVGGKYDGAYGVLAGLEVIAALNAAGIETLRPIEVVSWTNEEGSRFGPGAMGSSAFVE
PARLAGYRDVADAAGIRFGEALDAALAESHDVTRVPMARPMAACVELHIEQGPVLEGANVPLGVVTGIQAVRWFRVECTG
TMAHAGTTPMAVRCDAMAAAVAIAQDLYALAPRHAATPGTPELRLTLGRWSVAPNSVNTIPGHVTFTVDMRCLDDAALDR
AEAALRAVCVRHAHAPEAVTVTRFFHREPTHFPEAMLGTIERACARASRNAGRALPVRLTSGAFHDAMYLADHCPTAMIF
VPSKGGISHNAAEDTEGADLFLGAQALAYTVAELASR

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=417, Percent_Identity=35.7314148681055, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 45921; Mature: 45789

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSNPPPLANAQAIAERAQDHVGAGRLAASLAALASFGLRHDGGVSRETLTATDLAARR
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
HLIDQARALGCTVGIDDCGNLFFRRPGREDLPPVLTGSHADTQPVGGKYDGAYGVLAGLE
HHHHHHHHHEEEECCCHHCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH
VIAALNAAGIETLRPIEVVSWTNEEGSRFGPGAMGSSAFVEPARLAGYRDVADAAGIRFG
HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCHH
EALDAALAESHDVTRVPMARPMAACVELHIEQGPVLEGANVPLGVVTGIQAVRWFRVECT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHEEEEEEEE
GTMAHAGTTPMAVRCDAMAAAVAIAQDLYALAPRHAATPGTPELRLTLGRWSVAPNSVNT
EEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECEEECCCCCCC
IPGHVTFTVDMRCLDDAALDRAEAALRAVCVRHAHAPEAVTVTRFFHREPTHFPEAMLGT
CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCHHHHHHH
IERACARASRNAGRALPVRLTSGAFHDAMYLADHCPTAMIFVPSKGGISHNAAEDTEGAD
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCE
LFLGAQALAYTVAELASR
EEEHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVSNPPPLANAQAIAERAQDHVGAGRLAASLAALASFGLRHDGGVSRETLTATDLAARR
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
HLIDQARALGCTVGIDDCGNLFFRRPGREDLPPVLTGSHADTQPVGGKYDGAYGVLAGLE
HHHHHHHHHEEEECCCHHCHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH
VIAALNAAGIETLRPIEVVSWTNEEGSRFGPGAMGSSAFVEPARLAGYRDVADAAGIRFG
HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCHH
EALDAALAESHDVTRVPMARPMAACVELHIEQGPVLEGANVPLGVVTGIQAVRWFRVECT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHEEEEEEEE
GTMAHAGTTPMAVRCDAMAAAVAIAQDLYALAPRHAATPGTPELRLTLGRWSVAPNSVNT
EEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECEEECCCCCCC
IPGHVTFTVDMRCLDDAALDRAEAALRAVCVRHAHAPEAVTVTRFFHREPTHFPEAMLGT
CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCHHHHHHH
IERACARASRNAGRALPVRLTSGAFHDAMYLADHCPTAMIFVPSKGGISHNAAEDTEGAD
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCE
LFLGAQALAYTVAELASR
EEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]