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The map label for this gene is ydfH [C]

Identifier: 116695789

GI number: 116695789

Start: 2093689

End: 2094414

Strand: Direct

Name: ydfH [C]

Synonym: H16_B1853

Alternate gene names: 116695789

Gene position: 2093689-2094414 (Clockwise)

Preceding gene: 116695788

Following gene: 116695791

Centisome position: 71.89

GC content: 69.15

Gene sequence:

>726_bases
ATGCAAACTCCGGACGGCACCGGTGCAGCCGCCGCCCCGCTCCTGCCCAGGGTCGTGCGCCAGCGGCTGCACGACACCGT
GGTCGACCACCTGCGCAACTTTATCGTCGAGGGGGTGCTGCCGCCGGGCATGAAGCTCAATGAGCGCGAGCTGTGTGAAA
CGCTGGGCATCTCGCGCACGCCGCTGCGCGAGGCGCTGAAGGTGCTGGCCGCCGAGGGGCTGATCGAGATCTCGCCCAAC
CGCGGCGCGAGCGTGTCACGGATGAGCGAGGCCGAGGCCTGGGAAGCCTTCGAGCTGATGAGCGGCCTGGAGGCGTTTGC
CGGGGAGCTGGCGTGCGAGCGCATCACGCCGCCGGAGCTGGCCGAGATCAAGGCGCTGCACTACGCCATGCTGGCCTGCC
GCGCGCAGAACGACCTGCCCGGCTACTACGCCCGCAACCAGGAGATCCACGACCGCATCGCCGGTGCCGCGCGCAACCAG
ACGCTGCAGCAGACCTACCTGACCCTCAACCGGCGGCTCAAGGCGATGCGTTTCCGCTCCAACCACCAGACCGACAAATG
GGACCGCGCCGTGCACGATCACGAAGAGATGATCCACGCGCTGGAAGCCCGCGACGGCAAGCGGCTGGCGGCCATCCTGC
GCCAGCACTTGCTGGAGAAGCGCGCCGCGCTGATGCAGATCCATCCCGACCCGATCGGCGGCGCACCGGCGATGCCGAAC
GCCTGA

Upstream 100 bases:

>100_bases
ACGGCATGCCGCTGCGCGGTCCGGCGCGATAGGCGAGGAGCGGGCCGCCGCCCGCCGGCAATGTCTTAGAATGGCGCAAC
GCCAATGACAGGGACATTGC

Downstream 100 bases:

>100_bases
GGCCTGGCACCCTTAAGCCGTCAGGCGGCCGCCCCGGCCTCGGGACGATCCAGGTAGCCGCCGACGATACGGACCAGCAG
CGGCAGCTTGCCGGTAAAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MQTPDGTGAAAAPLLPRVVRQRLHDTVVDHLRNFIVEGVLPPGMKLNERELCETLGISRTPLREALKVLAAEGLIEISPN
RGASVSRMSEAEAWEAFELMSGLEAFAGELACERITPPELAEIKALHYAMLACRAQNDLPGYYARNQEIHDRIAGAARNQ
TLQQTYLTLNRRLKAMRFRSNHQTDKWDRAVHDHEEMIHALEARDGKRLAAILRQHLLEKRAALMQIHPDPIGGAPAMPN
A

Sequences:

>Translated_241_residues
MQTPDGTGAAAAPLLPRVVRQRLHDTVVDHLRNFIVEGVLPPGMKLNERELCETLGISRTPLREALKVLAAEGLIEISPN
RGASVSRMSEAEAWEAFELMSGLEAFAGELACERITPPELAEIKALHYAMLACRAQNDLPGYYARNQEIHDRIAGAARNQ
TLQQTYLTLNRRLKAMRFRSNHQTDKWDRAVHDHEEMIHALEARDGKRLAAILRQHLLEKRAALMQIHPDPIGGAPAMPN
A
>Mature_241_residues
MQTPDGTGAAAAPLLPRVVRQRLHDTVVDHLRNFIVEGVLPPGMKLNERELCETLGISRTPLREALKVLAAEGLIEISPN
RGASVSRMSEAEAWEAFELMSGLEAFAGELACERITPPELAEIKALHYAMLACRAQNDLPGYYARNQEIHDRIAGAARNQ
TLQQTYLTLNRRLKAMRFRSNHQTDKWDRAVHDHEEMIHALEARDGKRLAAILRQHLLEKRAALMQIHPDPIGGAPAMPN
A

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=198, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082149, Length=196, Percent_Identity=31.1224489795918, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26881; Mature: 26881

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTPDGTGAAAAPLLPRVVRQRLHDTVVDHLRNFIVEGVLPPGMKLNERELCETLGISRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
PLREALKVLAAEGLIEISPNRGASVSRMSEAEAWEAFELMSGLEAFAGELACERITPPEL
CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AEIKALHYAMLACRAQNDLPGYYARNQEIHDRIAGAARNQTLQQTYLTLNRRLKAMRFRS
HHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHQTDKWDRAVHDHEEMIHALEARDGKRLAAILRQHLLEKRAALMQIHPDPIGGAPAMPN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MQTPDGTGAAAAPLLPRVVRQRLHDTVVDHLRNFIVEGVLPPGMKLNERELCETLGISRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
PLREALKVLAAEGLIEISPNRGASVSRMSEAEAWEAFELMSGLEAFAGELACERITPPEL
CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AEIKALHYAMLACRAQNDLPGYYARNQEIHDRIAGAARNQTLQQTYLTLNRRLKAMRFRS
HHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHQTDKWDRAVHDHEEMIHALEARDGKRLAAILRQHLLEKRAALMQIHPDPIGGAPAMPN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]