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The map label for this gene is ycjZ [H]

Identifier: 116695368

GI number: 116695368

Start: 1595461

End: 1597275

Strand: Direct

Name: ycjZ [H]

Synonym: H16_B1425

Alternate gene names: 116695368

Gene position: 1595461-1597275 (Clockwise)

Preceding gene: 116695361

Following gene: 116695370

Centisome position: 54.78

GC content: 65.45

Gene sequence:

>1815_bases
ATGAAGATTGTCGTCATCGGGTGCACCGGCCTCATCGGAACAAAGCTTGTGCAGGACCTTCGCAAGCGCGGCCATGACGT
GCTCGCACCCGCCCCCGACACCGGCGTCAGCACCATCACCCGCGAGGGTTTGGCCAAAGCGCTCGACGGCGCCGAGGTCG
TCGTCGATGTGGCGAATGCGCCAGTATGGGGAGACGAGACGGCCCTCGAGTTTCTCGAGCGATCGGGCCGCAACCTCCTG
GCTGCGGGCGCTGCCGCCGGCGTACGCCACCATGTGGCCCTGTCGATCGTTGGTAGCGAACGGCTTCCCGACTGCGGCTA
TTTCCGGGCGAAGGTCGCGCAGGAGAGCCTCATCAAGGCGTCCGGCATTCCCTACACCATCGTGCGTGCGACGCAGTTCT
ACGAGTTTGTCGGCGACATTGCCCAGTCGGCTGCCCCGTTGGACACCTTAGGCAAGGAGATTCGCTTGTCGCCGGCGCTG
ATCCAGCCGATCGCGTCAGCGGACGTGGCAGCGGCGCTCGCCGAGGTTGCAGTCGCGCCGCCAGTCAACGGCACGGTCGA
AGTCGCCGGTCCGGAGGCGATGCCGCTGGACGAACTGGTCAGGCGCTTCCTGCGGGCGACGCAGGATACGCGCAAGGTCG
TGCCGGACGTCCACGCGCGCTACTTTGGTGGCCTCCTCTCCGATCGGACGCTCACACCCGGGGAGAACCCCCGCATCGGC
GCGATCCGGTTCGAGGACTGGCTCGGTCGCTACCAGGCTAAGTCCTGCTTCGCCATGCAGTCCCCTCTTTTGGCGACTGC
CGGCGCGGACAACTCGGAGGCGCTTGCATCGAGCTTCGCGACAAGCTATCCCGGAGTCGTCGCCTTCATCACCGTCGTGG
CCGAAGGCGGCTTTTCCAAGGCCGCTGACCGGCTCGGGATCACTCGTTCCGCGGTCAGCCGCTGCATCCAGAAGCTGGAG
GCGCAGGTCGGCTTGCGTCTGCTGAGTCGGACGACGCGCAGCATTTCGCTCACGCGCGAAGGCGAGATCCTTCATGCCCG
CTGCCAGCCCAGCGTCGCTCTCATCACGGAGGCGATGGAGGACCTGCGCGATCTGCGCGACGGTCCGCCGCGAGGACGCC
TGCGGGTCTCCGCTTCCGTGGGTTTCGGCCGCAAGGTGGTTGCACCGCTGCTGTGGGCCTTCCAGGAAAAGTACCCCGAC
ATCGAGATCGAGCTGCACCTGGGCTGCGTCGCGAGCGACTTCACGTCGGACCGCATCGACGTCTCGTTTCTCAACGGACG
CCTGGCCGACTCCCGGATCGTCGCGAAACGGATCGTCCCGATGCAGACTTTGGTGTGCGCCTCGCCCGCGTATGCGGTAA
GGCGCGGTATGCCCGAGTCGCCGGACGCGTTGATGCTGCACGACTGCATCAACGTCCGTCTGCCGTCGGGCCGCGTCTAC
GAATGGGAGTTCAAGGTGGAGGGGGGATTGCGAAAGCTGACGCCGCCATCGCGCATCATGTTCAACGATGACGGGCTCGT
GCTGGAGGCCGTCCTCCAAGGCAAAGGCATCGCTCAGTTGGGCGGGTACCTGATCTGCGATCTGCTGCGCGAGGGGAAAC
TGGTTCACTCCATGCCACAGTACGCACCCGATGACCAGGGCCACTACATCTGCTACCTGAGCCGTCAGCACCTGCCGTCG
CGTATCCGCGTGTTCGTCGACCACATGACGGCAGCGATCCGGGCGCTGGACCTTCAATGCGCGGGTGCTTTCTCACCAAC
GCCTGATGATCGACAGGTCGCCTTGGCGCCAATGGTGCCCCTGCGGGGTCAATAG

Upstream 100 bases:

>100_bases
AGAGAAATTCAAGGTGAAGGCAAGGACCTCTCCGGAGCGCGCGGGCAATCTCCACGCACATCGACTGCAACGGGTTGCGG
TCGAGAAACGGAGAGAAAAC

Downstream 100 bases:

>100_bases
ACTTGGCAAGACGAACGAGAGTCGACCCCACTCTTCGCTGGACTGGGCCACCCCCACCGAATTCGCCTGCCGATGCGGCC
TGCATGGCACATCGGTGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MKIVVIGCTGLIGTKLVQDLRKRGHDVLAPAPDTGVSTITREGLAKALDGAEVVVDVANAPVWGDETALEFLERSGRNLL
AAGAAAGVRHHVALSIVGSERLPDCGYFRAKVAQESLIKASGIPYTIVRATQFYEFVGDIAQSAAPLDTLGKEIRLSPAL
IQPIASADVAAALAEVAVAPPVNGTVEVAGPEAMPLDELVRRFLRATQDTRKVVPDVHARYFGGLLSDRTLTPGENPRIG
AIRFEDWLGRYQAKSCFAMQSPLLATAGADNSEALASSFATSYPGVVAFITVVAEGGFSKAADRLGITRSAVSRCIQKLE
AQVGLRLLSRTTRSISLTREGEILHARCQPSVALITEAMEDLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPD
IEIELHLGCVASDFTSDRIDVSFLNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALMLHDCINVRLPSGRVY
EWEFKVEGGLRKLTPPSRIMFNDDGLVLEAVLQGKGIAQLGGYLICDLLREGKLVHSMPQYAPDDQGHYICYLSRQHLPS
RIRVFVDHMTAAIRALDLQCAGAFSPTPDDRQVALAPMVPLRGQ

Sequences:

>Translated_604_residues
MKIVVIGCTGLIGTKLVQDLRKRGHDVLAPAPDTGVSTITREGLAKALDGAEVVVDVANAPVWGDETALEFLERSGRNLL
AAGAAAGVRHHVALSIVGSERLPDCGYFRAKVAQESLIKASGIPYTIVRATQFYEFVGDIAQSAAPLDTLGKEIRLSPAL
IQPIASADVAAALAEVAVAPPVNGTVEVAGPEAMPLDELVRRFLRATQDTRKVVPDVHARYFGGLLSDRTLTPGENPRIG
AIRFEDWLGRYQAKSCFAMQSPLLATAGADNSEALASSFATSYPGVVAFITVVAEGGFSKAADRLGITRSAVSRCIQKLE
AQVGLRLLSRTTRSISLTREGEILHARCQPSVALITEAMEDLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPD
IEIELHLGCVASDFTSDRIDVSFLNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALMLHDCINVRLPSGRVY
EWEFKVEGGLRKLTPPSRIMFNDDGLVLEAVLQGKGIAQLGGYLICDLLREGKLVHSMPQYAPDDQGHYICYLSRQHLPS
RIRVFVDHMTAAIRALDLQCAGAFSPTPDDRQVALAPMVPLRGQ
>Mature_604_residues
MKIVVIGCTGLIGTKLVQDLRKRGHDVLAPAPDTGVSTITREGLAKALDGAEVVVDVANAPVWGDETALEFLERSGRNLL
AAGAAAGVRHHVALSIVGSERLPDCGYFRAKVAQESLIKASGIPYTIVRATQFYEFVGDIAQSAAPLDTLGKEIRLSPAL
IQPIASADVAAALAEVAVAPPVNGTVEVAGPEAMPLDELVRRFLRATQDTRKVVPDVHARYFGGLLSDRTLTPGENPRIG
AIRFEDWLGRYQAKSCFAMQSPLLATAGADNSEALASSFATSYPGVVAFITVVAEGGFSKAADRLGITRSAVSRCIQKLE
AQVGLRLLSRTTRSISLTREGEILHARCQPSVALITEAMEDLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPD
IEIELHLGCVASDFTSDRIDVSFLNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALMLHDCINVRLPSGRVY
EWEFKVEGGLRKLTPPSRIMFNDDGLVLEAVLQGKGIAQLGGYLICDLLREGKLVHSMPQYAPDDQGHYICYLSRQHLPS
RIRVFVDHMTAAIRALDLQCAGAFSPTPDDRQVALAPMVPLRGQ

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=31.25, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1787128, Length=300, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=32.2916666666667, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=29.4326241134752, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=29.5138888888889, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=281, Percent_Identity=27.0462633451957, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.6223776223776, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=28.3216783216783, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1789173, Length=245, Percent_Identity=26.9387755102041, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=283, Percent_Identity=24.0282685512367, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=118, Percent_Identity=33.8983050847458, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788706, Length=284, Percent_Identity=23.5915492957746, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1786713, Length=118, Percent_Identity=33.8983050847458, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=118, Percent_Identity=35.5932203389831, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 65225; Mature: 65225

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVVIGCTGLIGTKLVQDLRKRGHDVLAPAPDTGVSTITREGLAKALDGAEVVVDVANA
CEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
PVWGDETALEFLERSGRNLLAAGAAAGVRHHVALSIVGSERLPDCGYFRAKVAQESLIKA
CCCCCHHHHHHHHHCCCCEEEHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
SGIPYTIVRATQFYEFVGDIAQSAAPLDTLGKEIRLSPALIQPIASADVAAALAEVAVAP
CCCCEEEHHHHHHHHHHHHHHHHCCCHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PVNGTVEVAGPEAMPLDELVRRFLRATQDTRKVVPDVHARYFGGLLSDRTLTPGENPRIG
CCCCEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEE
AIRFEDWLGRYQAKSCFAMQSPLLATAGADNSEALASSFATSYPGVVAFITVVAEGGFSK
EEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
AADRLGITRSAVSRCIQKLEAQVGLRLLSRTTRSISLTREGEILHARCQPSVALITEAME
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCHHHHHHHHHH
DLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPDIEIELHLGCVASDFTSDRID
HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCEE
VSFLNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALMLHDCINVRLPSGRVY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEHHHCEECCCCCEE
EWEFKVEGGLRKLTPPSRIMFNDDGLVLEAVLQGKGIAQLGGYLICDLLREGKLVHSMPQ
EEEEEECCCCCCCCCCCEEEECCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC
YAPDDQGHYICYLSRQHLPSRIRVFVDHMTAAIRALDLQCAGAFSPTPDDRQVALAPMVP
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEECCCC
LRGQ
CCCC
>Mature Secondary Structure
MKIVVIGCTGLIGTKLVQDLRKRGHDVLAPAPDTGVSTITREGLAKALDGAEVVVDVANA
CEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
PVWGDETALEFLERSGRNLLAAGAAAGVRHHVALSIVGSERLPDCGYFRAKVAQESLIKA
CCCCCHHHHHHHHHCCCCEEEHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
SGIPYTIVRATQFYEFVGDIAQSAAPLDTLGKEIRLSPALIQPIASADVAAALAEVAVAP
CCCCEEEHHHHHHHHHHHHHHHHCCCHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PVNGTVEVAGPEAMPLDELVRRFLRATQDTRKVVPDVHARYFGGLLSDRTLTPGENPRIG
CCCCEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEE
AIRFEDWLGRYQAKSCFAMQSPLLATAGADNSEALASSFATSYPGVVAFITVVAEGGFSK
EEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
AADRLGITRSAVSRCIQKLEAQVGLRLLSRTTRSISLTREGEILHARCQPSVALITEAME
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCHHHHHHHHHH
DLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPDIEIELHLGCVASDFTSDRID
HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCEE
VSFLNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALMLHDCINVRLPSGRVY
EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEHHHCEECCCCCEE
EWEFKVEGGLRKLTPPSRIMFNDDGLVLEAVLQGKGIAQLGGYLICDLLREGKLVHSMPQ
EEEEEECCCCCCCCCCCEEEECCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC
YAPDDQGHYICYLSRQHLPSRIRVFVDHMTAAIRALDLQCAGAFSPTPDDRQVALAPMVP
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEECCCC
LRGQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]