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The map label for this gene is cbbR

Identifier: 116695339

GI number: 116695339

Start: 1563091

End: 1564044

Strand: Direct

Name: cbbR

Synonym: H16_B1396

Alternate gene names: 116695339

Gene position: 1563091-1564044 (Clockwise)

Preceding gene: 116695323

Following gene: 116695343

Centisome position: 53.67

GC content: 66.77

Gene sequence:

>954_bases
ATGTCGTCCTTCCTGCGCGCCCTTACCCTTCGCCAGTTGCAGATCTTCGTCACCGTGGCCAGGCACGCCAGCTTCGTGCG
CGCGGCCGAAGAACTGCACCTGACCCAGCCTGCGGTCTCGATGCAGGTCAAGCAGCTTGAATCCGTGGTCGGCATGGCGC
TGTTCGAGCGGGTCAAGGGACAGCTCACGCTGACCGAGCCCGGCGACCGCCTGCTGCACCATGCGTCCCGGATCCTCGGC
GAGGTCAAGGACGCCGAGGAAGGCTTGCAGGCGGTCAAGGACGTCGAGCAGGGCTCGATCACGATCGGGCTGATCAGCAC
GTCGAAGTACTTCGCCCCCAAGCTGCTGGCCGGCTTTACCGCGCTGCACCCGGGCGTGGATCTGCGCATCGCCGAAGGCA
ACCGGGAAACGCTGCTGCGGCTGCTGCAGGACAACGCCATCGACCTCGCGCTGATGGGCCGCCCGCCGCGCGAACTGGAT
GCGGTGTCGGAACCCATCGCCGCGCATCCGCACGTGCTGGTGGCCTCGCCGCGGCACCCGTTACACGATGCAAAGGGGTT
CGACCTGCAGGAACTGCGTCACGAGACCTTCCTGCTGCGCGAACCGGGTTCAGGCACCCGCACCGTGGCGGAGTACATGT
TCCGGGACCACCTGTTCACGCCGGCCAAGGTGATCACCCTGGGCAGCAACGAGACCATCAAGCAGGCCGTGATGGCCGGC
ATGGGCATCAGCCTGTTGTCGCTGCACACGCTGGGACTGGAGCTGCGCACCGGCGAGATCGGGCTGCTGGACGTGGCCGG
CACGCCGATCGAGCGCATCTGGCATGTTGCGCATATGTCCAGCAAGCGTTTGTCGCCGGCCAGCGAGAGCTGCCGCGCCT
ATTTGCTGGAGCACACTGCGGAGTTTCTGGGGAGGGAGTACGGGGGGCTGATGCCCGGGCGGCGGGTGGCCTGA

Upstream 100 bases:

>100_bases
TAAGGTAAATTCAGATATTCTTAGCCCCTGTATAAGCAATCCCTTAAGTGCGGACCAAGCTGCACATCACGGGACCATCC
AAAGCCGCCCCCAACCGCCC

Downstream 100 bases:

>100_bases
GGTTCCAGGAGGGTTGGCTGGGATTAGAGAGCCATCCGTCCCGTCCCGGTCGGAACCCACTGGGCAGCGGCGGCTGGTGA
AGGCCTTCGGATGACAAAGG

Product: transcription regulator LysR

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEPGDRLLHHASRILG
EVKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFTALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELD
AVSEPIAAHPHVLVASPRHPLHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAG
MGISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTAEFLGREYGGLMPGRRVA

Sequences:

>Translated_317_residues
MSSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEPGDRLLHHASRILG
EVKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFTALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELD
AVSEPIAAHPHVLVASPRHPLHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAG
MGISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTAEFLGREYGGLMPGRRVA
>Mature_316_residues
SSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEPGDRLLHHASRILGE
VKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFTALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDA
VSEPIAAHPHVLVASPRHPLHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGM
GISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTAEFLGREYGGLMPGRRVA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (cfxLS) expression

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=32.8671328671329, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI157672245, Length=222, Percent_Identity=31.5315315315315, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI145693105, Length=241, Percent_Identity=28.6307053941909, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=30.03300330033, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789204, Length=249, Percent_Identity=28.5140562248996, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=27.891156462585, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082132, Length=284, Percent_Identity=27.4647887323944, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=27.0833333333333, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789173, Length=129, Percent_Identity=37.984496124031, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=218, Percent_Identity=27.9816513761468, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=273, Percent_Identity=27.4725274725275, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=26.6932270916335, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=26.5873015873016, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=242, Percent_Identity=25.2066115702479, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.4462809917355, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787128, Length=264, Percent_Identity=25.3787878787879, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=24, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994962, Length=189, Percent_Identity=29.1005291005291, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789639, Length=128, Percent_Identity=31.25, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789506, Length=209, Percent_Identity=27.7511961722488, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): CFXR_CUPNH (P42722)

Other databases:

- EMBL:   M65065
- EMBL:   AM260480
- PIR:   S18583
- RefSeq:   YP_840915.1
- ProteinModelPortal:   P42722
- STRING:   P42722
- GeneID:   4456355
- GenomeReviews:   AM260480_GR
- KEGG:   reh:H16_B1396
- eggNOG:   COG0583
- HOGENOM:   HBG685425
- OMA:   HHASRIL
- PhylomeDB:   P42722
- ProtClustDB:   CLSK768472
- BioCyc:   REUT381666:H16_B1396-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 34827; Mature: 34696

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
QLTLTEPGDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFT
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHH
ALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPRHP
HHCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCEEEEECCCCC
LHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAG
CCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
MGISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTA
CCHHHHHHHHHCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EFLGREYGGLMPGRRVA
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
QLTLTEPGDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFT
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHH
ALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPRHP
HHCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCEEEEECCCCC
LHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAG
CCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
MGISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTA
CCHHHHHHHHHCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EFLGREYGGLMPGRRVA
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1779759