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The map label for this gene is yfdE [H]

Identifier: 116695315

GI number: 116695315

Start: 1534733

End: 1536031

Strand: Direct

Name: yfdE [H]

Synonym: H16_B1372

Alternate gene names: 116695315

Gene position: 1534733-1536031 (Clockwise)

Preceding gene: 116695314

Following gene: 116695316

Centisome position: 52.69

GC content: 68.9

Gene sequence:

>1299_bases
ATGACAGATTCCACCGCTACGCCGGCCGCTGGCCTTCCTCCCCCCTCCGCCCGCACCGGCGCCCTGAGTCACCTGCGCGT
GCTCGATCTCTCGCGCGTGCTGGCCGGACCGTGGTCAACCCAGAACCTGGCGGACATGGGCGCCGACGTGATCAAGATCG
AAAAACCCGGCGAAGGCGACGATACGCGCCACTGGGGGCCCCCTTTCCTCGCCGACGAGGCCGGCGCGCCGACCCGGCAG
GCTTGCTATTTCACCGCCGCCAACCGCAACAAGCGCTCGGTCACCGTGGACATGGCCACGCCCGAGGGACAGGAGCTGAT
CCGCGAGCTGGCCCGGCAGAGCGATGTGGTGGTGGAGAATTTCAAGACCGGCGGCCTCAAGCGCTACGGGCTGGACTATG
ACAGCCTGAGCGCGCTCAACCCGCGCCTGATCTATTGCTCGGTCACGGGGTTTGGCCACACCGGACCCTACGCGGCGCGG
CCCGGCTACGACCTGCTGATCCAGGCCATGAGCGGCCTGATGAGCATCACCGGCCACGCCGACGGCGAGCCCGGCGGCGG
CCCGATGAAGGTAGGCGTGGCCGTGATCGACCTGTTCACCGGCATGTACGCCACCACCGCGATCCTGAGCGCGCTGGAAG
CGCGCCACTTCACCGGCCGCGGCCAGCATATCGACATCGCCCTGCTGGATGTGGCGATGGCGGTGCTGGCCAACCAGGGC
GCGGGCTTCCTGAACGCCGGCGACGTGCCGCGGCGCCAAGGCAATATCCACCCTAGCGTGGTGCCCTACCAGGACTTCCC
GACCGCCGACGGCAATATGCTGCTGGCCATCGGCAACGACGGGCAGTTCGCACGCTTCTGCGACGCCGCGGGCGTGGACT
GGGCGCGCGACGAGCGCTATGCCACCAATACCGGCCGCGTCAACAACCGCAAGACGCTGATCGCGATGATGATGGAGCTC
ACGCGCACCCGGTCCACGGCGCAATGGGTCGCGCTGCTGGAAGCCAATTCCGTGCCTTGCGGCCCCATCAACAATATCGC
CCAGGCCCACGCCGACCCCCATGTGCAACACCGTGGCCTGCGCGTCGAGCAAGAGCGCTATCCGGGAGCCCAGCCGCCCG
CCGGCGAGCCAGTGAACCACGTGGTCACCACGGCCAGCCCGCTGCGCCTGTCAGAGACGCCCCCGACGCTGCGCTACGCC
CCGCCCGCGCTGGGCCAGCACACCGACGAGGTGCTGCGCGACTACCTGAAGCTGAGCCCGCAGCAACTGGAAGCACTGCG
CGCCAGGCGCGTGGTGTAA

Upstream 100 bases:

>100_bases
GTAAGCACCGCGCCCCGCGCCAATACACCTGAACCATGCCCGCGCGCAACGCTGCCCGTCCCCAGGACGGGCAGCCTGCC
TTGAGACCGCCTGACCTGAC

Downstream 100 bases:

>100_bases
GCGGCCAGGCGGCTTTCGGCAGACAAGAAATCCGCCTTTGCCGATTACCGATTGCACCGTGCAACGGGCGCACATACACT
GGCGCCGTTCGGCTGGCCCC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MTDSTATPAAGLPPPSARTGALSHLRVLDLSRVLAGPWSTQNLADMGADVIKIEKPGEGDDTRHWGPPFLADEAGAPTRQ
ACYFTAANRNKRSVTVDMATPEGQELIRELARQSDVVVENFKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGHTGPYAAR
PGYDLLIQAMSGLMSITGHADGEPGGGPMKVGVAVIDLFTGMYATTAILSALEARHFTGRGQHIDIALLDVAMAVLANQG
AGFLNAGDVPRRQGNIHPSVVPYQDFPTADGNMLLAIGNDGQFARFCDAAGVDWARDERYATNTGRVNNRKTLIAMMMEL
TRTRSTAQWVALLEANSVPCGPINNIAQAHADPHVQHRGLRVEQERYPGAQPPAGEPVNHVVTTASPLRLSETPPTLRYA
PPALGQHTDEVLRDYLKLSPQQLEALRARRVV

Sequences:

>Translated_432_residues
MTDSTATPAAGLPPPSARTGALSHLRVLDLSRVLAGPWSTQNLADMGADVIKIEKPGEGDDTRHWGPPFLADEAGAPTRQ
ACYFTAANRNKRSVTVDMATPEGQELIRELARQSDVVVENFKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGHTGPYAAR
PGYDLLIQAMSGLMSITGHADGEPGGGPMKVGVAVIDLFTGMYATTAILSALEARHFTGRGQHIDIALLDVAMAVLANQG
AGFLNAGDVPRRQGNIHPSVVPYQDFPTADGNMLLAIGNDGQFARFCDAAGVDWARDERYATNTGRVNNRKTLIAMMMEL
TRTRSTAQWVALLEANSVPCGPINNIAQAHADPHVQHRGLRVEQERYPGAQPPAGEPVNHVVTTASPLRLSETPPTLRYA
PPALGQHTDEVLRDYLKLSPQQLEALRARRVV
>Mature_431_residues
TDSTATPAAGLPPPSARTGALSHLRVLDLSRVLAGPWSTQNLADMGADVIKIEKPGEGDDTRHWGPPFLADEAGAPTRQA
CYFTAANRNKRSVTVDMATPEGQELIRELARQSDVVVENFKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGHTGPYAARP
GYDLLIQAMSGLMSITGHADGEPGGGPMKVGVAVIDLFTGMYATTAILSALEARHFTGRGQHIDIALLDVAMAVLANQGA
GFLNAGDVPRRQGNIHPSVVPYQDFPTADGNMLLAIGNDGQFARFCDAAGVDWARDERYATNTGRVNNRKTLIAMMMELT
RTRSTAQWVALLEANSVPCGPINNIAQAHADPHVQHRGLRVEQERYPGAQPPAGEPVNHVVTTASPLRLSETPPTLRYAP
PALGQHTDEVLRDYLKLSPQQLEALRARRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=413, Percent_Identity=41.4043583535109, Blast_Score=320, Evalue=1e-87,
Organism=Homo sapiens, GI300863124, Length=439, Percent_Identity=39.1799544419134, Blast_Score=307, Evalue=2e-83,
Organism=Homo sapiens, GI300863126, Length=413, Percent_Identity=36.5617433414044, Blast_Score=265, Evalue=8e-71,
Organism=Homo sapiens, GI13376042, Length=439, Percent_Identity=35.7630979498861, Blast_Score=260, Evalue=2e-69,
Organism=Homo sapiens, GI266456254, Length=416, Percent_Identity=25.2403846153846, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI42794625, Length=416, Percent_Identity=25.2403846153846, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=270, Percent_Identity=28.8888888888889, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI266458397, Length=270, Percent_Identity=28.8888888888889, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=32.2368421052632, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=32.2368421052632, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=345, Percent_Identity=36.5217391304348, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI1788717, Length=434, Percent_Identity=31.5668202764977, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1786222, Length=266, Percent_Identity=28.9473684210526, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=261, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=227, Percent_Identity=28.1938325991189, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648431, Length=412, Percent_Identity=43.9320388349515, Blast_Score=336, Evalue=2e-92,
Organism=Drosophila melanogaster, GI24585488, Length=368, Percent_Identity=24.7282608695652, Blast_Score=101, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 46468; Mature: 46337

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSTATPAAGLPPPSARTGALSHLRVLDLSRVLAGPWSTQNLADMGADVIKIEKPGEGD
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCCC
DTRHWGPPFLADEAGAPTRQACYFTAANRNKRSVTVDMATPEGQELIRELARQSDVVVEN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEH
FKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGHTGPYAARPGYDLLIQAMSGLMSITGHA
HCCCCEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCC
DGEPGGGPMKVGVAVIDLFTGMYATTAILSALEARHFTGRGQHIDIALLDVAMAVLANQG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC
AGFLNAGDVPRRQGNIHPSVVPYQDFPTADGNMLLAIGNDGQFARFCDAAGVDWARDERY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCE
ATNTGRVNNRKTLIAMMMELTRTRSTAQWVALLEANSVPCGPINNIAQAHADPHVQHRGL
ECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCHHHHHHHCCCCCHHHCCC
RVEQERYPGAQPPAGEPVNHVVTTASPLRLSETPPTLRYAPPALGQHTDEVLRDYLKLSP
EEEHHHCCCCCCCCCCCHHHEEECCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCH
QQLEALRARRVV
HHHHHHHHHCCC
>Mature Secondary Structure 
TDSTATPAAGLPPPSARTGALSHLRVLDLSRVLAGPWSTQNLADMGADVIKIEKPGEGD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCCC
DTRHWGPPFLADEAGAPTRQACYFTAANRNKRSVTVDMATPEGQELIRELARQSDVVVEN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEH
FKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGHTGPYAARPGYDLLIQAMSGLMSITGHA
HCCCCEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCC
DGEPGGGPMKVGVAVIDLFTGMYATTAILSALEARHFTGRGQHIDIALLDVAMAVLANQG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC
AGFLNAGDVPRRQGNIHPSVVPYQDFPTADGNMLLAIGNDGQFARFCDAAGVDWARDERY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCE
ATNTGRVNNRKTLIAMMMELTRTRSTAQWVALLEANSVPCGPINNIAQAHADPHVQHRGL
ECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCHHHHHHHCCCCCHHHCCC
RVEQERYPGAQPPAGEPVNHVVTTASPLRLSETPPTLRYAPPALGQHTDEVLRDYLKLSP
EEEHHHCCCCCCCCCCCHHHEEECCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCH
QQLEALRARRVV
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]