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The map label for this gene is fimZ [C]

Identifier: 116695031

GI number: 116695031

Start: 1229948

End: 1230574

Strand: Direct

Name: fimZ [C]

Synonym: H16_B1086

Alternate gene names: 116695031

Gene position: 1229948-1230574 (Clockwise)

Preceding gene: 116695029

Following gene: 116695032

Centisome position: 42.23

GC content: 62.36

Gene sequence:

>627_bases
TTGACCACAATCCTGATCGTCGACGACCACCCGCCCGTGCGGGTGGTGCTAAAGACGCACTTTTCCCAGGTGCTGGGCAT
CACCCATGTGCTTGAGGCCGACAATGGCCAGGCCGCCATCGAGATCGTGCGGCAGTACACCCCCGACGTGGTGATCCTGG
ACCTGGACATCCCGAAGATCAACGGGCTGGACGTGATCCCCCGCCTCAAGGCCTGCCACCCCGCCGTGCGCATCCTGGTC
ATTTCCGGCCAGGACCAGAACACGTTTGCCCCGCGCGCGCGCCAGGCCGGCGCGCATGGTTTTGTCAGCAAGACCCAGGA
ACTGGCCGAGATCGTGCGCTGCACCGAGTCCGTGCTGGCCGGCTATACGGTGATGCCGGAAACCGACCGCGGCAACAACG
CCGGCCACGCCGACGAAGCCGCGCGCCTGGCCAGTCTTTCCGACAAGGAACTGGTGGTCATGCAGATGCTTGCCAAGGGC
ATGTCGAACAAGGAAATCGGCGAAACCCTGTTTATTTCCAACAAGACGGTCAGCACCCACAAGACCCGGGCCATGGAAAA
ACTCGGGGCAAAATCGATTGTCGATGTCATCGACTTTGCGCGGCGCCACCATATCGCGATCGGCTAG

Upstream 100 bases:

>100_bases
CCCGCGCTCGGAAATTTCCGGTGCCCTCCGGCACAAATGCTGAGCAAAATGATGTGCATGGGCGCCCGGACATCAGGGCG
CCTGTTATGGAGTTCAAGTT

Downstream 100 bases:

>100_bases
CATGCTGCCCGTGATTCGACTCGCATTGAGAAGCGGCGCATGACCGGCGCGTTGCTGCTTGCCACGCCCGGCGACACGCG
CTGGGTCGCCGGGGTTGCCC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKINGLDVIPRLKACHPAVRILV
ISGQDQNTFAPRARQAGAHGFVSKTQELAEIVRCTESVLAGYTVMPETDRGNNAGHADEAARLASLSDKELVVMQMLAKG
MSNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVDVIDFARRHHIAIG

Sequences:

>Translated_208_residues
MTTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKINGLDVIPRLKACHPAVRILV
ISGQDQNTFAPRARQAGAHGFVSKTQELAEIVRCTESVLAGYTVMPETDRGNNAGHADEAARLASLSDKELVVMQMLAKG
MSNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVDVIDFARRHHIAIG
>Mature_207_residues
TTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKINGLDVIPRLKACHPAVRILVI
SGQDQNTFAPRARQAGAHGFVSKTQELAEIVRCTESVLAGYTVMPETDRGNNAGHADEAARLASLSDKELVVMQMLAKGM
SNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVDVIDFARRHHIAIG

Specific function: Probable transcriptional regulator [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=33.9805825242718, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1788712, Length=206, Percent_Identity=34.9514563106796, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1788222, Length=207, Percent_Identity=31.8840579710145, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790102, Length=211, Percent_Identity=29.8578199052133, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=29.0816326530612, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787473, Length=186, Percent_Identity=31.1827956989247, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=24.390243902439, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22673; Mature: 22541

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKI
CEEEEEECCCCCEEHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCEEEEEECCCCC
NGLDVIPRLKACHPAVRILVISGQDQNTFAPRARQAGAHGFVSKTQELAEIVRCTESVLA
CCCCCCCHHHHCCCEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
GYTVMPETDRGNNAGHADEAARLASLSDKELVVMQMLAKGMSNKEIGETLFISNKTVSTH
CCEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
KTRAMEKLGAKSIVDVIDFARRHHIAIG
HHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKI
EEEEEECCCCCEEHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCEEEEEECCCCC
NGLDVIPRLKACHPAVRILVISGQDQNTFAPRARQAGAHGFVSKTQELAEIVRCTESVLA
CCCCCCCHHHHCCCEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
GYTVMPETDRGNNAGHADEAARLASLSDKELVVMQMLAKGMSNKEIGETLFISNKTVSTH
CCEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
KTRAMEKLGAKSIVDVIDFARRHHIAIG
HHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3127651; 10984043; 2314271 [H]