Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 116695029

GI number: 116695029

Start: 1226744

End: 1227217

Strand: Direct

Name: bkdR [H]

Synonym: H16_B1084

Alternate gene names: 116695029

Gene position: 1226744-1227217 (Clockwise)

Preceding gene: 116695021

Following gene: 116695031

Centisome position: 42.12

GC content: 64.77

Gene sequence:

>474_bases
GTGCAATCGATCGAGCTGGACCGTACCGATCGCCGCTTGCTGGGGGTTTTGCAGGAGCAGGGGCGGGCCTCCAACCTGGA
GCTGGCAGAGGCCATCGCGCTGTCGCCGGCGCAGACTTTGCGGCGCCACCGCCGCCTGGAAGAGGCCGGGCTGGTCAAAC
GCTATGAGGCGCGGCTGGACGCGGCGGCGCTGGGCTTTGGCGTGGTGGCCTTTATCCATGTGACGATGGAGCGCGGGCAT
ATCCGCGACCTGTCCAACTTCAAGCGCCTGGTGGCGGAACTGGCGCAGATCCAGGAATGCTTCTCGGTGACCGGGGATAT
CGACTACGTGCTCAAGGTGGTCGCAAAGGACCTGAAGTCGCTGTCTGACTTCCTGCTCGATACGCTGATGCGTATCCCGG
GTGTCAGCGGCGTGAAGTCCAGCGTGTGCCTGGACGAGATCAAGTGCACCAGCGCGGTGCCGCTGGAGGCCTGA

Upstream 100 bases:

>100_bases
GTGTATATTCCTGACGGCAAAATTGGATTTCGTAAAACAGGCAGGGAAACCCTAGATTATGAAATTCGATTGCGTGAATC
TCTGATGTGAGGAAATCAAA

Downstream 100 bases:

>100_bases
ACCCGAAGGGAAGGCTGCTGCCGGGCCGCAGGGCTAGGCGTGGTCGACGCCGCGTGGTTATTTCCACGCAAGGAGGCCGC
AACAACGCCCTGCGGCCCGG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MQSIELDRTDRRLLGVLQEQGRASNLELAEAIALSPAQTLRRHRRLEEAGLVKRYEARLDAAALGFGVVAFIHVTMERGH
IRDLSNFKRLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAVPLEA

Sequences:

>Translated_157_residues
MQSIELDRTDRRLLGVLQEQGRASNLELAEAIALSPAQTLRRHRRLEEAGLVKRYEARLDAAALGFGVVAFIHVTMERGH
IRDLSNFKRLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAVPLEA
>Mature_157_residues
MQSIELDRTDRRLLGVLQEQGRASNLELAEAIALSPAQTLRRHRRLEEAGLVKRYEARLDAAALGFGVVAFIHVTMERGH
IRDLSNFKRLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAVPLEA

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=147, Percent_Identity=38.7755102040816, Blast_Score=116, Evalue=6e-28,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=31.1258278145695, Blast_Score=90, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17378; Mature: 17378

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSIELDRTDRRLLGVLQEQGRASNLELAEAIALSPAQTLRRHRRLEEAGLVKRYEARLD
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAALGFGVVAFIHVTMERGHIRDLSNFKRLVAELAQIQECFSVTGDIDYVLKVVAKDLKS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAVPLEA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQSIELDRTDRRLLGVLQEQGRASNLELAEAIALSPAQTLRRHRRLEEAGLVKRYEARLD
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAALGFGVVAFIHVTMERGHIRDLSNFKRLVAELAQIQECFSVTGDIDYVLKVVAKDLKS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAVPLEA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]