| Definition | Ralstonia eutropha H16 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008314 |
| Length | 2,912,490 |
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The map label for this gene is plcN3 [H]
Identifier: 116695012
GI number: 116695012
Start: 1205830
End: 1208010
Strand: Direct
Name: plcN3 [H]
Synonym: H16_B1067
Alternate gene names: 116695012
Gene position: 1205830-1208010 (Clockwise)
Preceding gene: 116695011
Following gene: 116695015
Centisome position: 41.4
GC content: 65.98
Gene sequence:
>2181_bases ATGACCAAAATCGATCGACGCACCTTCCTCTCCGGCGCCGTCAGAAGCGCTGCCGCTGCTTCGGTTCTGTCGATGCTGCC GCCCAGCATCGCGCGCGCACTCGCCGTTCCCGCTGCGGTCAATACCGGCACGATCCAGGACGTGCAGCACGTGGTGATCC TGATGCAGGAAAACCGCGCCCTGGACCATTACTTCGGCGCCATGCGCGGCGTGCGTGGCTTCGGCGACCGCTTCCCGGTG CCGGTGCCGTCAGGCAAGCCGGTGTGGTTCGAATCGAACGGCGCGCGCGAGATCACGCCGTTCCACCTCGACAGCGCGAC CGTCAACGCGCTGCGCGTCTCCGGCACGCCGCACAGCTTCATGGATGCGCAGAATGCGTGGAACCAGGGCCGTTTCGGCT TCTGGGCCAAGTACAAGAACGACCATTCGATGGGCTACTACCGTCGTGAAGACATTCCGTTCCAGTACGCGCTGGCCGAG GCCTTCACGCTTTGCGACGCCTACCACTGCAGCCACGCCGGCGGCACCGACCCGAACCGCATCACTTTCATGTCGGGCTC CAACTACAACCCCGCGCTGCGCGAGGCGGGGCGCAACTGCACGCTTGACGATGCGGAGGTCAATAACCTGCGCTGCAGCG TGAGCGGCAAGCTGCCCACGCCGGGCTACACCTACAAGGGTTCCGCCTTCCAGTGGGCCACGCTGCCGGAACTGCTGCAG GCAAAGGGCGTGAGCTGGCGCATCTACCAGAACCCCAACGCCAACTGGGGCGGCCTGCTGCATGGCGGGCTCGCCTTCAA GAGCTTCCGTGAAGCGCAGCCGGGCAATCCGCTCTATGACAACGGCATGAGCAGCTGGACCATCGAGCAGCTGGCCGCGC ATGTGCGGGACGACACGCTGCCGGCCGTGAGCTGGATCCTGCCGACGCCGGCGCAGTCCGAACATCCGGGCGGCCCGTCG AGCGCAACCGAAGGCGCGGACTTCATCAACACGGTGCTGACGGCGCTGACCGCCAACCCGGAGGTCTGGAGCAAGACCGT GTTCTTCATCACCTTCGATGAGAATGACGGCTTCTTCGACCATATGCCGCCGGCCGCGGTGCCGTCCTACGACGCCAATG GCGTCCTGCACGGCAAGTCGACCGTCGACGTCACCGGCGAATACTTCGACACCGCCGGCAATACGGCGCTCGACGGCACC ACCACCAGCGGCGAGACCATCCGCCTGCGCCCGTACGGGCTCGGCCCGCGCGTGCCGATGTATGTGATCTCGCCGTGGAC GCGCGGCGGCTGGATCAACTCGCAGGTGTTCGACCACACCTCGATGGGGCGCTTCCTGGAACAGCGCTTCGGCATCACGG TGCCCGCGATCAGCCCGTGGCACCGCGCGGTGGCCGGCGACCTGACTTCGGTCTTCGATTTCAGGACGCCGAATGACCAG GTGTTTCCGACGCTGCCGGATACCAGCAACTACAAGCAGGTGATCGCGGAACAGCTGGCGAAACCCAAGGCGGCGGCACC GGCCGTGTCGGCGTCGCTGTTCCAGGAGACTGGCACCAAGTATTCGCGCGCGCTGCCCTATGTCCTCCATGCGAGTGCGC TGGCCGAGCCCACCATCGGCAAGCTGAAGCTGATCTTCAGCAATACGGGGGAGCAGGGCGCGGTCTTCCATGTCTACGAC CGGCTCCATCTGGACCAGATTCCGCGCCGCTACACGGTCGAGCCCGGCAAGATGCTGGACGATGAATGGGATGCGCGCGC CACGGACAACGGACGCTATGACCTGGCGGTCTACGGGCCTAACGGCTTCGTGCGCATGTTCAAGGGCCAGTTGCCCGCGG ACGCCATGGCCGATGCCCCTGAGGTCCGCGTCTGCTACGACCTGGGCAAGGGCAGCGTCTACCTGTCGGCGCGCAACGAC GGCAAGGGCGCAGTCAACGGTGGCGGCAAGCCGCTGACGCTGGTGGTGACGCCCAATGCTTATCGTAACGACGGTCCGTG GCAACTCCATATCACGGCCGGCGCCGAGGTGGAGCACCACTGGCCGCTGCAGGAGAGCGGCAACTGGTACGACTTCACGG TCACGGAAGCCGAAAGCGGATTCGAACGCCGCTTCGCCGGTCGCCTGGAGACCGGCCAGCATGGCGTGACGGACCCGGCG ATGGCAACCGGGCTGGGCTGA
Upstream 100 bases:
>100_bases CCAGCCGGCGACGCGGCAGCGTCGAAGCAGGGCATGCACTGCGCACCCTGACACACCCGCGACCCTTCCTCTATCGTCCG CTCCTACCATTCCCCCGATC
Downstream 100 bases:
>100_bases GTGTCTGGTCGCCGCGGTCCGGCCGGAATGCGTGCCGGACCGCAGCTTTGTGCGGTGATGGCACATCGCCTCGAAGCTCC CGATCTCGATGCGGATCTGC
Product: phospholipase C
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MTKIDRRTFLSGAVRSAAAASVLSMLPPSIARALAVPAAVNTGTIQDVQHVVILMQENRALDHYFGAMRGVRGFGDRFPV PVPSGKPVWFESNGAREITPFHLDSATVNALRVSGTPHSFMDAQNAWNQGRFGFWAKYKNDHSMGYYRREDIPFQYALAE AFTLCDAYHCSHAGGTDPNRITFMSGSNYNPALREAGRNCTLDDAEVNNLRCSVSGKLPTPGYTYKGSAFQWATLPELLQ AKGVSWRIYQNPNANWGGLLHGGLAFKSFREAQPGNPLYDNGMSSWTIEQLAAHVRDDTLPAVSWILPTPAQSEHPGGPS SATEGADFINTVLTALTANPEVWSKTVFFITFDENDGFFDHMPPAAVPSYDANGVLHGKSTVDVTGEYFDTAGNTALDGT TTSGETIRLRPYGLGPRVPMYVISPWTRGGWINSQVFDHTSMGRFLEQRFGITVPAISPWHRAVAGDLTSVFDFRTPNDQ VFPTLPDTSNYKQVIAEQLAKPKAAAPAVSASLFQETGTKYSRALPYVLHASALAEPTIGKLKLIFSNTGEQGAVFHVYD RLHLDQIPRRYTVEPGKMLDDEWDARATDNGRYDLAVYGPNGFVRMFKGQLPADAMADAPEVRVCYDLGKGSVYLSARND GKGAVNGGGKPLTLVVTPNAYRNDGPWQLHITAGAEVEHHWPLQESGNWYDFTVTEAESGFERRFAGRLETGQHGVTDPA MATGLG
Sequences:
>Translated_726_residues MTKIDRRTFLSGAVRSAAAASVLSMLPPSIARALAVPAAVNTGTIQDVQHVVILMQENRALDHYFGAMRGVRGFGDRFPV PVPSGKPVWFESNGAREITPFHLDSATVNALRVSGTPHSFMDAQNAWNQGRFGFWAKYKNDHSMGYYRREDIPFQYALAE AFTLCDAYHCSHAGGTDPNRITFMSGSNYNPALREAGRNCTLDDAEVNNLRCSVSGKLPTPGYTYKGSAFQWATLPELLQ AKGVSWRIYQNPNANWGGLLHGGLAFKSFREAQPGNPLYDNGMSSWTIEQLAAHVRDDTLPAVSWILPTPAQSEHPGGPS SATEGADFINTVLTALTANPEVWSKTVFFITFDENDGFFDHMPPAAVPSYDANGVLHGKSTVDVTGEYFDTAGNTALDGT TTSGETIRLRPYGLGPRVPMYVISPWTRGGWINSQVFDHTSMGRFLEQRFGITVPAISPWHRAVAGDLTSVFDFRTPNDQ VFPTLPDTSNYKQVIAEQLAKPKAAAPAVSASLFQETGTKYSRALPYVLHASALAEPTIGKLKLIFSNTGEQGAVFHVYD RLHLDQIPRRYTVEPGKMLDDEWDARATDNGRYDLAVYGPNGFVRMFKGQLPADAMADAPEVRVCYDLGKGSVYLSARND GKGAVNGGGKPLTLVVTPNAYRNDGPWQLHITAGAEVEHHWPLQESGNWYDFTVTEAESGFERRFAGRLETGQHGVTDPA MATGLG >Mature_725_residues TKIDRRTFLSGAVRSAAAASVLSMLPPSIARALAVPAAVNTGTIQDVQHVVILMQENRALDHYFGAMRGVRGFGDRFPVP VPSGKPVWFESNGAREITPFHLDSATVNALRVSGTPHSFMDAQNAWNQGRFGFWAKYKNDHSMGYYRREDIPFQYALAEA FTLCDAYHCSHAGGTDPNRITFMSGSNYNPALREAGRNCTLDDAEVNNLRCSVSGKLPTPGYTYKGSAFQWATLPELLQA KGVSWRIYQNPNANWGGLLHGGLAFKSFREAQPGNPLYDNGMSSWTIEQLAAHVRDDTLPAVSWILPTPAQSEHPGGPSS ATEGADFINTVLTALTANPEVWSKTVFFITFDENDGFFDHMPPAAVPSYDANGVLHGKSTVDVTGEYFDTAGNTALDGTT TSGETIRLRPYGLGPRVPMYVISPWTRGGWINSQVFDHTSMGRFLEQRFGITVPAISPWHRAVAGDLTSVFDFRTPNDQV FPTLPDTSNYKQVIAEQLAKPKAAAPAVSASLFQETGTKYSRALPYVLHASALAEPTIGKLKLIFSNTGEQGAVFHVYDR LHLDQIPRRYTVEPGKMLDDEWDARATDNGRYDLAVYGPNGFVRMFKGQLPADAMADAPEVRVCYDLGKGSVYLSARNDG KGAVNGGGKPLTLVVTPNAYRNDGPWQLHITAGAEVEHHWPLQESGNWYDFTVTEAESGFERRFAGRLETGQHGVTDPAM ATGLG
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 79359; Mature: 79228
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKIDRRTFLSGAVRSAAAASVLSMLPPSIARALAVPAAVNTGTIQDVQHVVILMQENRA CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHEEEEEEEECCCC LDHYFGAMRGVRGFGDRFPVPVPSGKPVWFESNGAREITPFHLDSATVNALRVSGTPHSF HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCEEEEEEECCCCHHH MDAQNAWNQGRFGFWAKYKNDHSMGYYRREDIPFQYALAEAFTLCDAYHCSHAGGTDPNR HHHHHCCCCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE ITFMSGSNYNPALREAGRNCTLDDAEVNNLRCSVSGKLPTPGYTYKGSAFQWATLPELLQ EEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEHHHHHHHH AKGVSWRIYQNPNANWGGLLHGGLAFKSFREAQPGNPLYDNGMSSWTIEQLAAHVRDDTL HCCCEEEEEECCCCCCCCEEECCHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHCCCCC PAVSWILPTPAQSEHPGGPSSATEGADFINTVLTALTANPEVWSKTVFFITFDENDGFFD CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC HMPPAAVPSYDANGVLHGKSTVDVTGEYFDTAGNTALDGTTTSGETIRLRPYGLGPRVPM CCCCCCCCCCCCCEEEECCCEEEECCHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCCE YVISPWTRGGWINSQVFDHTSMGRFLEQRFGITVPAISPWHRAVAGDLTSVFDFRTPNDQ EEECCCCCCCCCCCHHHCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCCC VFPTLPDTSNYKQVIAEQLAKPKAAAPAVSASLFQETGTKYSRALPYVLHASALAEPTIG EEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCC KLKLIFSNTGEQGAVFHVYDRLHLDQIPRRYTVEPGKMLDDEWDARATDNGRYDLAVYGP EEEEEEECCCCCCCEEEEEHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC NGFVRMFKGQLPADAMADAPEVRVCYDLGKGSVYLSARNDGKGAVNGGGKPLTLVVTPNA CCEEEEECCCCCCHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEECCCC YRNDGPWQLHITAGAEVEHHWPLQESGNWYDFTVTEAESGFERRFAGRLETGQHGVTDPA CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCH MATGLG HHCCCC >Mature Secondary Structure TKIDRRTFLSGAVRSAAAASVLSMLPPSIARALAVPAAVNTGTIQDVQHVVILMQENRA CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHEEEEEEEECCCC LDHYFGAMRGVRGFGDRFPVPVPSGKPVWFESNGAREITPFHLDSATVNALRVSGTPHSF HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCEEEEEEECCCCHHH MDAQNAWNQGRFGFWAKYKNDHSMGYYRREDIPFQYALAEAFTLCDAYHCSHAGGTDPNR HHHHHCCCCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE ITFMSGSNYNPALREAGRNCTLDDAEVNNLRCSVSGKLPTPGYTYKGSAFQWATLPELLQ EEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEHHHHHHHH AKGVSWRIYQNPNANWGGLLHGGLAFKSFREAQPGNPLYDNGMSSWTIEQLAAHVRDDTL HCCCEEEEEECCCCCCCCEEECCHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHCCCCC PAVSWILPTPAQSEHPGGPSSATEGADFINTVLTALTANPEVWSKTVFFITFDENDGFFD CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC HMPPAAVPSYDANGVLHGKSTVDVTGEYFDTAGNTALDGTTTSGETIRLRPYGLGPRVPM CCCCCCCCCCCCCEEEECCCEEEECCHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCCE YVISPWTRGGWINSQVFDHTSMGRFLEQRFGITVPAISPWHRAVAGDLTSVFDFRTPNDQ EEECCCCCCCCCCCHHHCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCCC VFPTLPDTSNYKQVIAEQLAKPKAAAPAVSASLFQETGTKYSRALPYVLHASALAEPTIG EEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCC KLKLIFSNTGEQGAVFHVYDRLHLDQIPRRYTVEPGKMLDDEWDARATDNGRYDLAVYGP EEEEEEECCCCCCCEEEEEHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC NGFVRMFKGQLPADAMADAPEVRVCYDLGKGSVYLSARNDGKGAVNGGGKPLTLVVTPNA CCEEEEECCCCCCHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEECCCC YRNDGPWQLHITAGAEVEHHWPLQESGNWYDFTVTEAESGFERRFAGRLETGQHGVTDPA CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCH MATGLG HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2120196; 10984043 [H]