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The map label for this gene is ccmH2 [H]

Identifier: 116694904

GI number: 116694904

Start: 1080333

End: 1081370

Strand: Direct

Name: ccmH2 [H]

Synonym: H16_B0959

Alternate gene names: 116694904

Gene position: 1080333-1081370 (Clockwise)

Preceding gene: 116694903

Following gene: 116694905

Centisome position: 37.09

GC content: 63.97

Gene sequence:

>1038_bases
ATGACATCGGCGCAGGTATTCTGGGGATTCGCCACCGCCCTGACCATTGGTGCGCTGCTGACCGTATTGCAGCCAATGGT
GGCAGGTATCGCCGTTGCGAAAGGCCGGGCGCGCCGGGTTCAGTTCCTGGCCGGGCTAGCTATCACGCTGGTGGCCCTGG
CAGGGTATCTTGCTGTCGGCCGGCCGGACCTGATCGGGCCGGAATCTGGCAGCGGGTCAGGAGCAACGCCGCGGGAAACG
TCGATTCCGCATCTGATCAAGCGTCTTGAGGCGCATCTGCAGCAATGGCCTGACGATGCCGATGCCGCACTGTTGCTCGC
GCGCTCATACTATGCCGCAGCCCGTTTCGCCGAGGCGGTGCCGGCGTTCGAGCGCGCATTCGTGCTGAAGGCACCCGCGG
CACCGCAGCTTGCCGATTATGCCGATGCGCGTACTGCGCAAAATGGGGGCACTTTTGATGCGCAGGCACAGAAGGCTGTT
GAACGCGCGCTGGCACTTGATGCGCAGCATGTGAAGTCGCTGTGGCTGGCGGGCAGCTTTGCCTTCAATGACCGGCGCCC
TGCCGACGCGATTGTTTACTGGACGCGCCTGGCGCCATTGCTGCCAGCCGATTCCGAAGAGCTACGCCGTCTGCAGGCCA
ACATTGCCGGAGCGCGTGCGCAGGTGGGGACCGGTTCGGCTGTTGCGGGCAACAAGAAGCAGCTTTCCGGCACCGTAGCA
ATTGCCCCCGAATTGCAGGCGTCTGTTGGCAGTACCGACACGCTCTACGTATTCGCACGCGGGCTGCAAGGGCCGCCGAT
GCCGCTGGCTGTCTTCAAGGCAGTGCCTGGACGCTGGCCGGTGGCGTTTTCGCTGGACGAGAGCATGGCGGTGATGGGCG
GTGCGCGCCTGAGTGAGCGGGAAAGCGCGATGGTTGTCGCACGAATCTCACGTTCCGGCCAGGCGATCGGCCAGCCAGGC
GACCTGGAAAGCGGGGCGGTACAGGTGAAGGTGGGCGCTGCTGGCATCCAGCTGTTGATTGATACGGTAAGGAAATGA

Upstream 100 bases:

>100_bases
TGCTCATGTTGGTGGGAATGGTGGTGCTCTACCGGCATGCTGCCGGATCGCGGGCACGCGAGCGGGCGGGTAAGGCTGGC
GGCAGCGAGGAGGGAAGCAT

Downstream 100 bases:

>100_bases
GGGTTGATCCGCGACGATCATAGGGTAGACGACCAGCTGCCGCTGCCCACAACGCCGCCCAGCGTCTCAGTAGCGGATTC
TGTGGTCCCGCGATGTGCTG

Product: cytochrome c biogenesis factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTSAQVFWGFATALTIGALLTVLQPMVAGIAVAKGRARRVQFLAGLAITLVALAGYLAVGRPDLIGPESGSGSGATPRET
SIPHLIKRLEAHLQQWPDDADAALLLARSYYAAARFAEAVPAFERAFVLKAPAAPQLADYADARTAQNGGTFDAQAQKAV
ERALALDAQHVKSLWLAGSFAFNDRRPADAIVYWTRLAPLLPADSEELRRLQANIAGARAQVGTGSAVAGNKKQLSGTVA
IAPELQASVGSTDTLYVFARGLQGPPMPLAVFKAVPGRWPVAFSLDESMAVMGGARLSERESAMVVARISRSGQAIGQPG
DLESGAVQVKVGAAGIQLLIDTVRK

Sequences:

>Translated_345_residues
MTSAQVFWGFATALTIGALLTVLQPMVAGIAVAKGRARRVQFLAGLAITLVALAGYLAVGRPDLIGPESGSGSGATPRET
SIPHLIKRLEAHLQQWPDDADAALLLARSYYAAARFAEAVPAFERAFVLKAPAAPQLADYADARTAQNGGTFDAQAQKAV
ERALALDAQHVKSLWLAGSFAFNDRRPADAIVYWTRLAPLLPADSEELRRLQANIAGARAQVGTGSAVAGNKKQLSGTVA
IAPELQASVGSTDTLYVFARGLQGPPMPLAVFKAVPGRWPVAFSLDESMAVMGGARLSERESAMVVARISRSGQAIGQPG
DLESGAVQVKVGAAGIQLLIDTVRK
>Mature_344_residues
TSAQVFWGFATALTIGALLTVLQPMVAGIAVAKGRARRVQFLAGLAITLVALAGYLAVGRPDLIGPESGSGSGATPRETS
IPHLIKRLEAHLQQWPDDADAALLLARSYYAAARFAEAVPAFERAFVLKAPAAPQLADYADARTAQNGGTFDAQAQKAVE
RALALDAQHVKSLWLAGSFAFNDRRPADAIVYWTRLAPLLPADSEELRRLQANIAGARAQVGTGSAVAGNKKQLSGTVAI
APELQASVGSTDTLYVFARGLQGPPMPLAVFKAVPGRWPVAFSLDESMAVMGGARLSERESAMVVARISRSGQAIGQPGD
LESGAVQVKVGAAGIQLLIDTVRK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36117; Mature: 35986

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAQVFWGFATALTIGALLTVLQPMVAGIAVAKGRARRVQFLAGLAITLVALAGYLAVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RPDLIGPESGSGSGATPRETSIPHLIKRLEAHLQQWPDDADAALLLARSYYAAARFAEAV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
PAFERAFVLKAPAAPQLADYADARTAQNGGTFDAQAQKAVERALALDAQHVKSLWLAGSF
HHHHHHEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
AFNDRRPADAIVYWTRLAPLLPADSEELRRLQANIAGARAQVGTGSAVAGNKKQLSGTVA
ECCCCCCHHHHEEHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHCCCEEE
IAPELQASVGSTDTLYVFARGLQGPPMPLAVFKAVPGRWPVAFSLDESMAVMGGARLSER
ECCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCH
ESAMVVARISRSGQAIGQPGDLESGAVQVKVGAAGIQLLIDTVRK
HHHEEEEEHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCC
>Mature Secondary Structure 
TSAQVFWGFATALTIGALLTVLQPMVAGIAVAKGRARRVQFLAGLAITLVALAGYLAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RPDLIGPESGSGSGATPRETSIPHLIKRLEAHLQQWPDDADAALLLARSYYAAARFAEAV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
PAFERAFVLKAPAAPQLADYADARTAQNGGTFDAQAQKAVERALALDAQHVKSLWLAGSF
HHHHHHEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
AFNDRRPADAIVYWTRLAPLLPADSEELRRLQANIAGARAQVGTGSAVAGNKKQLSGTVA
ECCCCCCHHHHEEHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHCCCEEE
IAPELQASVGSTDTLYVFARGLQGPPMPLAVFKAVPGRWPVAFSLDESMAVMGGARLSER
ECCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCH
ESAMVVARISRSGQAIGQPGDLESGAVQVKVGAAGIQLLIDTVRK
HHHEEEEEHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]