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The map label for this gene is yfdE [H]

Identifier: 116694639

GI number: 116694639

Start: 767532

End: 768776

Strand: Direct

Name: yfdE [H]

Synonym: H16_B0688

Alternate gene names: 116694639

Gene position: 767532-768776 (Clockwise)

Preceding gene: 116694638

Following gene: 116694640

Centisome position: 26.35

GC content: 70.44

Gene sequence:

>1245_bases
ATGGCGGGCAGCCAGGCCGCGGCGCACGGCGCGCTTGCCGGCGTGCGGGTGCTGGACCTGTCGCGCATCCTGGCCGGTCC
CTGGTGCGCGCAGAACCTGGCGGACCTGGGCGCCGAAGTCATCAAGGTGGAGCGGCCCGGCGCGGGCGACGACACCCGTT
CGTGGGGGCCGCCCTGGCTGCCCGGCGCGGACGGGCAGCCGTCGCGCGACGCCACCTACTTTGCCGGCGCCAACCGCGGC
AAGCAGTCGGTGACGCTCGATATCGCCAGCCCGCAAGGGCAGGAGATTGTGCGCGAACTGGCGGCCAAGTCGCAGATCGT
GCTGGAGAACTACAAGGTCGGCGACCTGAAGCGCTACGGGCTGGACTATGACAGCCTCAAGGCGATCAACCCGTCCATCG
TCTACTGCTCGATCACGGGCTACGGCCAGACCGGGCCGAGCGCGCACAAGCCCGGCTATGACTTCATCTTCCAGGGCCTG
GGCGGCCTGATGAGCGTCACCGGCGAGCGCGACGACCTGCCCGGCGGCGGGCCGCAGAAGGTGGGCGTGGCGGTGGTCGA
CATGCTTACCGGCATGTATGCCACCGTGGCCGTGCTGGCCGCGTTGCGCCATGCCGAGCGCACCGGCGAGGGCCAGCATA
TCGACATGGCGCTGCTCGATGCGGTGGTGGCGGTCGGCGCCACGCCGATCATCGCCCAGCGCGTGACCGGCAAGGCCATG
CCGCGCTACGGCAATGCGCACGCCAATATGGTGCCCTACCATGTGTTCGCCACCGCCGACGGCTACATGATCGTGGCGGC
CGGTAACGACGGGCAGTGGCAGGCGTATTGCCGCGGCGTCGAGCGTCCCGACCTGGCCGCCGACGAGCGCTTTGCCACCG
GCCCCGGCCGCATCATCCATCGCGACACGCTGGTGCCGCTGCTCGAGGCGCATATGCGCACGCGGCCGACGGCGCACTGG
GTGCAGGCGCTGGAAGCGCAGGGCATCCCGTGCGGGCCGATCAACGACTACGGCCAGGTGCTGGAAGACCCGCAGGTGCG
GCATCGCGAGCTGCAGGTCGACCTGGTGCGCGACGACGGCAGCCTGTGCCCGACCGTCAAGAGCCCGTTGCGGCTGTCGG
CAACCCCGGTGCAATACGACGCACCGCCGCCGCGGCTGGGCGAGCATACCGAACAGGTGCTGGAATCGGTGCTGGGTATG
TCGGCCGAGCGCATCGCCAGGCTGCGCGAGCAAGGCGTGGTCTGA

Upstream 100 bases:

>100_bases
GGACGCCTGAAACCGTGGGCGAGATCGCCATGCCGGCGATGCGCAACAGCTTCTTCAAGCTGGAGCGTTCGCCCGATGTG
ATCAGCTGGGACCCGATCTG

Downstream 100 bases:

>100_bases
TTGGTGACGGATGCCTGGCAGGCAACTGCCGGGCACTGCCTGCTTCCGGGCGGATCACCAGGCCTCTGCACAAAGTCCCC
CCATCGCCTAGGCTGTCTGG

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAGSQAAAHGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPGAGDDTRSWGPPWLPGADGQPSRDATYFAGANRG
KQSVTLDIASPQGQEIVRELAAKSQIVLENYKVGDLKRYGLDYDSLKAINPSIVYCSITGYGQTGPSAHKPGYDFIFQGL
GGLMSVTGERDDLPGGGPQKVGVAVVDMLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRVTGKAM
PRYGNAHANMVPYHVFATADGYMIVAAGNDGQWQAYCRGVERPDLAADERFATGPGRIIHRDTLVPLLEAHMRTRPTAHW
VQALEAQGIPCGPINDYGQVLEDPQVRHRELQVDLVRDDGSLCPTVKSPLRLSATPVQYDAPPPRLGEHTEQVLESVLGM
SAERIARLREQGVV

Sequences:

>Translated_414_residues
MAGSQAAAHGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPGAGDDTRSWGPPWLPGADGQPSRDATYFAGANRG
KQSVTLDIASPQGQEIVRELAAKSQIVLENYKVGDLKRYGLDYDSLKAINPSIVYCSITGYGQTGPSAHKPGYDFIFQGL
GGLMSVTGERDDLPGGGPQKVGVAVVDMLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRVTGKAM
PRYGNAHANMVPYHVFATADGYMIVAAGNDGQWQAYCRGVERPDLAADERFATGPGRIIHRDTLVPLLEAHMRTRPTAHW
VQALEAQGIPCGPINDYGQVLEDPQVRHRELQVDLVRDDGSLCPTVKSPLRLSATPVQYDAPPPRLGEHTEQVLESVLGM
SAERIARLREQGVV
>Mature_413_residues
AGSQAAAHGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPGAGDDTRSWGPPWLPGADGQPSRDATYFAGANRGK
QSVTLDIASPQGQEIVRELAAKSQIVLENYKVGDLKRYGLDYDSLKAINPSIVYCSITGYGQTGPSAHKPGYDFIFQGLG
GLMSVTGERDDLPGGGPQKVGVAVVDMLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRVTGKAMP
RYGNAHANMVPYHVFATADGYMIVAAGNDGQWQAYCRGVERPDLAADERFATGPGRIIHRDTLVPLLEAHMRTRPTAHWV
QALEAQGIPCGPINDYGQVLEDPQVRHRELQVDLVRDDGSLCPTVKSPLRLSATPVQYDAPPPRLGEHTEQVLESVLGMS
AERIARLREQGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=407, Percent_Identity=40.2948402948403, Blast_Score=315, Evalue=7e-86,
Organism=Homo sapiens, GI300863124, Length=433, Percent_Identity=37.8752886836028, Blast_Score=301, Evalue=1e-81,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=35.9801488833747, Blast_Score=267, Evalue=1e-71,
Organism=Homo sapiens, GI13376042, Length=433, Percent_Identity=34.4110854503464, Blast_Score=254, Evalue=1e-67,
Organism=Homo sapiens, GI266456254, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI42794625, Length=413, Percent_Identity=25.90799031477, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=28.7878787878788, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=28.7878787878788, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=32.2368421052632, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=32.2368421052632, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI87082093, Length=387, Percent_Identity=31.5245478036176, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=29.1764705882353, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=25.4807692307692, Blast_Score=93, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=341, Percent_Identity=21.7008797653959, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=21.4076246334311, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=41.1910669975186, Blast_Score=312, Evalue=2e-85,
Organism=Drosophila melanogaster, GI24585488, Length=336, Percent_Identity=23.5119047619048, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44232; Mature: 44101

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSQAAAHGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPGAGDDTRSWGPPWL
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCCCCC
PGADGQPSRDATYFAGANRGKQSVTLDIASPQGQEIVRELAAKSQIVLENYKVGDLKRYG
CCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCHHHHC
LDYDSLKAINPSIVYCSITGYGQTGPSAHKPGYDFIFQGLGGLMSVTGERDDLPGGGPQK
CCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
VGVAVVDMLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRVTGKAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCC
PRYGNAHANMVPYHVFATADGYMIVAAGNDGQWQAYCRGVERPDLAADERFATGPGRIIH
CCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEE
RDTLVPLLEAHMRTRPTAHWVQALEAQGIPCGPINDYGQVLEDPQVRHRELQVDLVRDDG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHEEEEEEEECCC
SLCPTVKSPLRLSATPVQYDAPPPRLGEHTEQVLESVLGMSAERIARLREQGVV
CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AGSQAAAHGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPGAGDDTRSWGPPWL
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCCCCC
PGADGQPSRDATYFAGANRGKQSVTLDIASPQGQEIVRELAAKSQIVLENYKVGDLKRYG
CCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCHHHHC
LDYDSLKAINPSIVYCSITGYGQTGPSAHKPGYDFIFQGLGGLMSVTGERDDLPGGGPQK
CCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
VGVAVVDMLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRVTGKAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCC
PRYGNAHANMVPYHVFATADGYMIVAAGNDGQWQAYCRGVERPDLAADERFATGPGRIIH
CCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEE
RDTLVPLLEAHMRTRPTAHWVQALEAQGIPCGPINDYGQVLEDPQVRHRELQVDLVRDDG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHEEEEEEEECCC
SLCPTVKSPLRLSATPVQYDAPPPRLGEHTEQVLESVLGMSAERIARLREQGVV
CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]