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The map label for this gene is yngJ [H]

Identifier: 116694612

GI number: 116694612

Start: 735347

End: 736414

Strand: Direct

Name: yngJ [H]

Synonym: H16_B0661

Alternate gene names: 116694612

Gene position: 735347-736414 (Clockwise)

Preceding gene: 116694611

Following gene: 116694613

Centisome position: 25.25

GC content: 72.47

Gene sequence:

>1068_bases
ATGGATTTCGCATTGACCGAAGAGCAGGAGCAGTTTGCCGAGGCGATCCGGCGCTTCCTGATGACCGAGATGACGCCCGA
ACTGACGCGCGAGCTGTGGGCCACCGAGTCTGGCCGCTCCGACGCGCTGTGGCGCCAGCTTGCCAACCAGGGCCTGACCG
CGGTGATGGTGCCGCAGGAGCAGGGCGGACTGGGGCTGGGCGAGGTCGAATGGGCGCCGCTGGCGCAGGCCTGCGGCTAC
TTTGCGCTGCCCGAGCCTTTGCTGGACACTGCGCTGGTCGCGGCCGGGCTGCTGCGCGATGCGCTCGCGGCGGCGCCGAA
CGCCTCGGCGCACGAACGCTGCGCCACGCTGCTGGAGCGCATCGCCGCCGGCGATGCCCGCGTGGCGGTGGCGCATCCGC
AAGAGCGGCTGGTGGCCGACGCCCATGTCGCCGACGCGATCCTGTGCGCGCACGAAGGTGCCGTGCACCTGCTGCGGCCC
GACCAGGCCGTGCTGACGGCGCGCACCGGGCTCGATCCTTCGCGCCGCCTGTTCGAGCTGGCGTGGACGCCGGCCGCGGA
GTCCGAACTGATCCCGTCCGGTAGTGGCCTGTGGAGCAGCGCGCTGAACCGCGGCGCGCTTGGCGTGGCCGCGCAGCAGC
TGGGCCTGACCCAGCGCATGCTGGACCTGGCGATCGACTACAGCGCGCAGCGCAAGCAGTTCGGCAAGGCCATCGGCGCC
TACCAGGCGGTCAAGCACCTGCTGGCCGACGTGGCGATCCAGCTCGAGTTCGCCCGGCCGGTGCTGCTGCGCGCCGCCGC
CGCGCTGGCGCACGGCCTGCCCGATGCGGGCCTGCATGTCTCGCACGCCCGCGTGGCCGCCGCGCGCTGCGCGTGGAGCG
CGGCGCGCCAGGCGATCCAGGTGCATGGCGCAATGGGCTACACCTGGGAGCTGGACCTGCAGATCTTCACCAAGCGCGCC
TGGGCCCTGGCGGGAAGCTGGGGCGACCGTGCCTTCCACAAGGCGCGCATGGGCGCGCACATCCTTGACGGCGTGCATGA
GATCGGCGCCGGCGCCACCTTCGCCTGA

Upstream 100 bases:

>100_bases
CCGGGCCGATCTATGCCGGCACCAACGAGATCCAGCGCAATATCGTCGCCGAGCGCCTGCTCGGCATGCCGCGCGCATGA
CGGCACCCGGGGAAAACACC

Downstream 100 bases:

>100_bases
ATCCAAAGAGAACCAAGACCATGAAAGACGCCTATATCGTTGATGCCCTGCGCACGCCCACCGGGCGCCGCAAGGGCGGA
CTGTCGCACATGCACGGCGC

Product: Acyl-CoA dehydrogenase

Products: 2,3-dehydroacyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MDFALTEEQEQFAEAIRRFLMTEMTPELTRELWATESGRSDALWRQLANQGLTAVMVPQEQGGLGLGEVEWAPLAQACGY
FALPEPLLDTALVAAGLLRDALAAAPNASAHERCATLLERIAAGDARVAVAHPQERLVADAHVADAILCAHEGAVHLLRP
DQAVLTARTGLDPSRRLFELAWTPAAESELIPSGSGLWSSALNRGALGVAAQQLGLTQRMLDLAIDYSAQRKQFGKAIGA
YQAVKHLLADVAIQLEFARPVLLRAAAALAHGLPDAGLHVSHARVAAARCAWSAARQAIQVHGAMGYTWELDLQIFTKRA
WALAGSWGDRAFHKARMGAHILDGVHEIGAGATFA

Sequences:

>Translated_355_residues
MDFALTEEQEQFAEAIRRFLMTEMTPELTRELWATESGRSDALWRQLANQGLTAVMVPQEQGGLGLGEVEWAPLAQACGY
FALPEPLLDTALVAAGLLRDALAAAPNASAHERCATLLERIAAGDARVAVAHPQERLVADAHVADAILCAHEGAVHLLRP
DQAVLTARTGLDPSRRLFELAWTPAAESELIPSGSGLWSSALNRGALGVAAQQLGLTQRMLDLAIDYSAQRKQFGKAIGA
YQAVKHLLADVAIQLEFARPVLLRAAAALAHGLPDAGLHVSHARVAAARCAWSAARQAIQVHGAMGYTWELDLQIFTKRA
WALAGSWGDRAFHKARMGAHILDGVHEIGAGATFA
>Mature_355_residues
MDFALTEEQEQFAEAIRRFLMTEMTPELTRELWATESGRSDALWRQLANQGLTAVMVPQEQGGLGLGEVEWAPLAQACGY
FALPEPLLDTALVAAGLLRDALAAAPNASAHERCATLLERIAAGDARVAVAHPQERLVADAHVADAILCAHEGAVHLLRP
DQAVLTARTGLDPSRRLFELAWTPAAESELIPSGSGLWSSALNRGALGVAAQQLGLTQRMLDLAIDYSAQRKQFGKAIGA
YQAVKHLLADVAIQLEFARPVLLRAAAALAHGLPDAGLHVSHARVAAARCAWSAARQAIQVHGAMGYTWELDLQIFTKRA
WALAGSWGDRAFHKARMGAHILDGVHEIGAGATFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=120, Percent_Identity=36.6666666666667, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4557233, Length=147, Percent_Identity=32.6530612244898, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17570075, Length=365, Percent_Identity=25.7534246575342, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=145, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508101, Length=118, Percent_Identity=31.3559322033898, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24646207, Length=123, Percent_Identity=38.2113821138211, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21356377, Length=349, Percent_Identity=25.214899713467, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24666513, Length=110, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.3

Molecular weight: Translated: 37982; Mature: 37982

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFALTEEQEQFAEAIRRFLMTEMTPELTRELWATESGRSDALWRQLANQGLTAVMVPQE
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECC
QGGLGLGEVEWAPLAQACGYFALPEPLLDTALVAAGLLRDALAAAPNASAHERCATLLER
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
IAAGDARVAVAHPQERLVADAHVADAILCAHEGAVHLLRPDQAVLTARTGLDPSRRLFEL
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHEEECCCCCHHHHHHHH
AWTPAAESELIPSGSGLWSSALNRGALGVAAQQLGLTQRMLDLAIDYSAQRKQFGKAIGA
HCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YQAVKHLLADVAIQLEFARPVLLRAAAALAHGLPDAGLHVSHARVAAARCAWSAARQAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHGAMGYTWELDLQIFTKRAWALAGSWGDRAFHKARMGAHILDGVHEIGAGATFA
HHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDFALTEEQEQFAEAIRRFLMTEMTPELTRELWATESGRSDALWRQLANQGLTAVMVPQE
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECC
QGGLGLGEVEWAPLAQACGYFALPEPLLDTALVAAGLLRDALAAAPNASAHERCATLLER
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
IAAGDARVAVAHPQERLVADAHVADAILCAHEGAVHLLRPDQAVLTARTGLDPSRRLFEL
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHEEECCCCCHHHHHHHH
AWTPAAESELIPSGSGLWSSALNRGALGVAAQQLGLTQRMLDLAIDYSAQRKQFGKAIGA
HCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YQAVKHLLADVAIQLEFARPVLLRAAAALAHGLPDAGLHVSHARVAAARCAWSAARQAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHGAMGYTWELDLQIFTKRAWALAGSWGDRAFHKARMGAHILDGVHEIGAGATFA
HHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: acyl-CoA; acceptor

Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]