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The map label for this gene is ybhD [H]

Identifier: 116694568

GI number: 116694568

Start: 687998

End: 688915

Strand: Direct

Name: ybhD [H]

Synonym: H16_B0617

Alternate gene names: 116694568

Gene position: 687998-688915 (Clockwise)

Preceding gene: 116694563

Following gene: 116694571

Centisome position: 23.62

GC content: 65.47

Gene sequence:

>918_bases
ATGATCAATCCTGCCCATTTCGATCTCCAGTCCCTGCGCGTCTTCCAGCTGGTGGCCCAATGCGGCGGGCTGACGCAGGC
GGCGAACAAGTCACACATGACGCTGTCGGCCCTGAGCAAACGGATCGCGGATCTTGAGCGCACGGTGGGATGCGCGCTGT
TCCTGCGGGTTCGGCGCGGGCTTGAGCTGACCCCCGCTGGCCATGAGCTGGTCCAGCATGCGCGCATGGTGCTCGACAAG
GTCAACCAGATGGCGGGCGAGATGAGCGACTTCGCCACCGGCGTGCGCGGACACGTCAAGGTCTGGGCCAATACGTCAGC
CGTGATCCAGTTCCTTCCGCACGACCTGGCAAGCTTCCTGGCCTCGCAGCCGATGATCAGGATCAGCCTGGAGGAGCGCC
TGAGCCAGGACGTGGTGGTAGCGCTGCTGTCCGGTGAAACCGATATCGGCGTGTTCGCCGACAACGTGCCGGCTTATGAC
ATCAGGAAGTCTGTCTATCGGCGTGACCGCCTGGTCGTCCTGGTGCCTGCCGGGCATCCGCTGGCCGGGCGCCCGGAAGT
GAGTTTCGACGAAACCCTGGAGTACGACTTTGTCGGCCTCAACCAGGGCAGCTCGCTGCTGCAGCGCCTGACCGACGCCG
CATCGGCACTGGACAAGGTGGTGCGGCTGAGGATCCAGGTCAGCAGCTTCGATGCGATCTGCCGGATGATCGAGGCCGGC
CTGGGCATCGGCGTCCTGCCAGATGGCGCGGTCCGGCCCGAACTGCTGGGTGCCGGGCTGCATGCCGTCTACCTGTCCGA
CGCCTGGGCCTCACGCATTCTCTGGCTGGGCGTGAGGGACGAAGCTGGTCTCTTGCCGGAGGCAAGGACGCTCCTGGAGC
ATCTGCGTGCAGCGGGCTCTGCCAGCGCGAGTCGCTGA

Upstream 100 bases:

>100_bases
GCGCTGCCGGGAGCCGGGCGCGCCGTTTGACAAGGCGCGAGCGGCTTACTAGCCTTTCCTGGCTTTCAATCCAGTCGGCG
CGCGTCGCCAGTGCAATACC

Downstream 100 bases:

>100_bases
TGACACGGTAGTGCCGTCATCAGATGTCGAAGTAGAGCTGGAATTCCCACGGGTGTGGCCGCACCTTCAATGTATCGATC
TCGCGCGTGCGCTTGTAATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MINPAHFDLQSLRVFQLVAQCGGLTQAANKSHMTLSALSKRIADLERTVGCALFLRVRRGLELTPAGHELVQHARMVLDK
VNQMAGEMSDFATGVRGHVKVWANTSAVIQFLPHDLASFLASQPMIRISLEERLSQDVVVALLSGETDIGVFADNVPAYD
IRKSVYRRDRLVVLVPAGHPLAGRPEVSFDETLEYDFVGLNQGSSLLQRLTDAASALDKVVRLRIQVSSFDAICRMIEAG
LGIGVLPDGAVRPELLGAGLHAVYLSDAWASRILWLGVRDEAGLLPEARTLLEHLRAAGSASASR

Sequences:

>Translated_305_residues
MINPAHFDLQSLRVFQLVAQCGGLTQAANKSHMTLSALSKRIADLERTVGCALFLRVRRGLELTPAGHELVQHARMVLDK
VNQMAGEMSDFATGVRGHVKVWANTSAVIQFLPHDLASFLASQPMIRISLEERLSQDVVVALLSGETDIGVFADNVPAYD
IRKSVYRRDRLVVLVPAGHPLAGRPEVSFDETLEYDFVGLNQGSSLLQRLTDAASALDKVVRLRIQVSSFDAICRMIEAG
LGIGVLPDGAVRPELLGAGLHAVYLSDAWASRILWLGVRDEAGLLPEARTLLEHLRAAGSASASR
>Mature_305_residues
MINPAHFDLQSLRVFQLVAQCGGLTQAANKSHMTLSALSKRIADLERTVGCALFLRVRRGLELTPAGHELVQHARMVLDK
VNQMAGEMSDFATGVRGHVKVWANTSAVIQFLPHDLASFLASQPMIRISLEERLSQDVVVALLSGETDIGVFADNVPAYD
IRKSVYRRDRLVVLVPAGHPLAGRPEVSFDETLEYDFVGLNQGSSLLQRLTDAASALDKVVRLRIQVSSFDAICRMIEAG
LGIGVLPDGAVRPELLGAGLHAVYLSDAWASRILWLGVRDEAGLLPEARTLLEHLRAAGSASASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=28.4210526315789, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=24.2320819112628, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=27.6422764227642, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=24.0963855421687, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790262, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=240, Percent_Identity=28.75, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=272, Percent_Identity=27.2058823529412, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=20.9621993127148, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=24.6478873239437, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788297, Length=268, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=260, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=26.3374485596708, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=25.2032520325203, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=25.0996015936255, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33120; Mature: 33120

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPAHFDLQSLRVFQLVAQCGGLTQAANKSHMTLSALSKRIADLERTVGCALFLRVRRG
CCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LELTPAGHELVQHARMVLDKVNQMAGEMSDFATGVRGHVKVWANTSAVIQFLPHDLASFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
ASQPMIRISLEERLSQDVVVALLSGETDIGVFADNVPAYDIRKSVYRRDRLVVLVPAGHP
HCCCEEEEEHHHHCCHHHEEHEECCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCC
LAGRPEVSFDETLEYDFVGLNQGSSLLQRLTDAASALDKVVRLRIQVSSFDAICRMIEAG
CCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGIGVLPDGAVRPELLGAGLHAVYLSDAWASRILWLGVRDEAGLLPEARTLLEHLRAAGS
CCCCCCCCCCCCHHHHHCCHHHEEHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCC
ASASR
CCCCC
>Mature Secondary Structure
MINPAHFDLQSLRVFQLVAQCGGLTQAANKSHMTLSALSKRIADLERTVGCALFLRVRRG
CCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LELTPAGHELVQHARMVLDKVNQMAGEMSDFATGVRGHVKVWANTSAVIQFLPHDLASFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
ASQPMIRISLEERLSQDVVVALLSGETDIGVFADNVPAYDIRKSVYRRDRLVVLVPAGHP
HCCCEEEEEHHHHCCHHHEEHEECCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCC
LAGRPEVSFDETLEYDFVGLNQGSSLLQRLTDAASALDKVVRLRIQVSSFDAICRMIEAG
CCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGIGVLPDGAVRPELLGAGLHAVYLSDAWASRILWLGVRDEAGLLPEARTLLEHLRAAGS
CCCCCCCCCCCCHHHHHCCHHHEEHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCC
ASASR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]