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The map label for this gene is yfdE [H]

Identifier: 116694439

GI number: 116694439

Start: 552544

End: 553779

Strand: Direct

Name: yfdE [H]

Synonym: H16_B0488

Alternate gene names: 116694439

Gene position: 552544-553779 (Clockwise)

Preceding gene: 116694435

Following gene: 116694441

Centisome position: 18.97

GC content: 69.09

Gene sequence:

>1236_bases
ATGCAAGACCAGGACACACACGCTGTATCGCCAGACGCACACTGCACGGGCCCGCTGGCCGGACTGCGCATCCTGGACAT
GGCCACCGTGGTGGCCGGCCCGTTTTCCGCCACGCTGTGTGCCGACATGGGCGCCGATGTGGTCAAGCTCGAGCTGCCCG
ACGGCAGCGATCCGCTGCGCGGGCTTGAACCGGTTACCGAGGACCACGCCCTGTACTGGAAGGTGACCAACCGCGGCAAG
CGCGGCATCTCGCTCGACGTGCGCACGCCGCGCGGCCGCGAGATCTTCCTGCGCTTGCTGCCCCAGTTCGATGTGCTGGT
CGAGAACTTCCGCACCGGCACGCTCACGCGCTGGGGGCTGGATCTCGACACCCTCCATGCGGCCAACCCGAAGCTGATCG
TGCTGCGGCTGACCGGCTTCGGCCAGACCGGGCCCGATGCGGCGCGGCCCGGCTTTGCCCGCATCTTTGAAGCCAGGAGC
GGCTTCACCAACCTGGCGGGCACCGCGCAGAGCGGACCGATGCATATGAACTACCCGGTGGGGGACATGATCGCCGGGCT
GTTCGGCGCGTTTGCGATTGCCACTGCGGTGGCAGAGCAGCGCGCCAGGCCCGGCCAGCGCGGCCGCGAGATCGACCTGG
CCGCCACCGAGGCGTTGTTCCGCCTGCTGGATCCGCTGGCCATCGAATATGAACAGTTGGGGCATGTGCGCCAGCGCGCC
GGCAACCGCACCACCTACGCGGCGCCGTCCAACATGTACCGCACCGCGGACGAGATCTGGGTCACGGTAGTGGCCTCCTC
CGACGCCACCTTCCGCCGGCTGGCCGAGGCCATGGGCGCACCGCAACTGGCGCAGGCGCCGGAATACGCCACCAACGCCG
GGCGCGTGCGCAATATCGAAGCGCTGGACGGCAGCATTGCCGAGTGGTTTGCCGCACAGCCCTATGCCGCCGTGGCGGCC
CGGCTGGAGCAGTGCCAGGTGCCATTCAGCAAGGTATTCAGCATCGCCGATATCGTCGACGACCCGCAGATGGCGGCGCG
CCAGGCCATCGTGCGGCTGCCCGATCCGGACCTGGGCTCGGTGCCGGCGCCATGCGTGGTGCCGCGCTTCTCGGGCTATG
CGCCGCCGTCACCGCGTACCGGGCCGGATGTGGGCGAACACAATGCCGAGGTCTATGGGCGGCTTGGTATCGGGGATGAG
GAGCTGGTCCGGCTGCGGGCGGAGGGCGTGGTCTGA

Upstream 100 bases:

>100_bases
AATGTTGTAGCACGACAGTTCCGCACAGCGAAACCGTGCTTGCATCCGGGCAAGCCGCCTGCCACCTTGCAGCAGACGCC
AATGCCGCCGGAGGCCCGCC

Downstream 100 bases:

>100_bases
CACACCGGGCGCGAAGGCTCACTCCCCAGTCATCAGCGCCGAGAAGTCCCCCACGATCTGCCGCAACAGCCGTGCCGCCG
GCGGCGACAACACCCGGCCC

Product: acyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MQDQDTHAVSPDAHCTGPLAGLRILDMATVVAGPFSATLCADMGADVVKLELPDGSDPLRGLEPVTEDHALYWKVTNRGK
RGISLDVRTPRGREIFLRLLPQFDVLVENFRTGTLTRWGLDLDTLHAANPKLIVLRLTGFGQTGPDAARPGFARIFEARS
GFTNLAGTAQSGPMHMNYPVGDMIAGLFGAFAIATAVAEQRARPGQRGREIDLAATEALFRLLDPLAIEYEQLGHVRQRA
GNRTTYAAPSNMYRTADEIWVTVVASSDATFRRLAEAMGAPQLAQAPEYATNAGRVRNIEALDGSIAEWFAAQPYAAVAA
RLEQCQVPFSKVFSIADIVDDPQMAARQAIVRLPDPDLGSVPAPCVVPRFSGYAPPSPRTGPDVGEHNAEVYGRLGIGDE
ELVRLRAEGVV

Sequences:

>Translated_411_residues
MQDQDTHAVSPDAHCTGPLAGLRILDMATVVAGPFSATLCADMGADVVKLELPDGSDPLRGLEPVTEDHALYWKVTNRGK
RGISLDVRTPRGREIFLRLLPQFDVLVENFRTGTLTRWGLDLDTLHAANPKLIVLRLTGFGQTGPDAARPGFARIFEARS
GFTNLAGTAQSGPMHMNYPVGDMIAGLFGAFAIATAVAEQRARPGQRGREIDLAATEALFRLLDPLAIEYEQLGHVRQRA
GNRTTYAAPSNMYRTADEIWVTVVASSDATFRRLAEAMGAPQLAQAPEYATNAGRVRNIEALDGSIAEWFAAQPYAAVAA
RLEQCQVPFSKVFSIADIVDDPQMAARQAIVRLPDPDLGSVPAPCVVPRFSGYAPPSPRTGPDVGEHNAEVYGRLGIGDE
ELVRLRAEGVV
>Mature_411_residues
MQDQDTHAVSPDAHCTGPLAGLRILDMATVVAGPFSATLCADMGADVVKLELPDGSDPLRGLEPVTEDHALYWKVTNRGK
RGISLDVRTPRGREIFLRLLPQFDVLVENFRTGTLTRWGLDLDTLHAANPKLIVLRLTGFGQTGPDAARPGFARIFEARS
GFTNLAGTAQSGPMHMNYPVGDMIAGLFGAFAIATAVAEQRARPGQRGREIDLAATEALFRLLDPLAIEYEQLGHVRQRA
GNRTTYAAPSNMYRTADEIWVTVVASSDATFRRLAEAMGAPQLAQAPEYATNAGRVRNIEALDGSIAEWFAAQPYAAVAA
RLEQCQVPFSKVFSIADIVDDPQMAARQAIVRLPDPDLGSVPAPCVVPRFSGYAPPSPRTGPDVGEHNAEVYGRLGIGDE
ELVRLRAEGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=402, Percent_Identity=26.865671641791, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI300863124, Length=428, Percent_Identity=25.4672897196262, Blast_Score=152, Evalue=8e-37,
Organism=Homo sapiens, GI300863126, Length=404, Percent_Identity=25, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI13376042, Length=428, Percent_Identity=22.8971962616822, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266456254, Length=395, Percent_Identity=26.0759493670886, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI42794625, Length=395, Percent_Identity=26.0759493670886, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI266458393, Length=298, Percent_Identity=28.5234899328859, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458397, Length=276, Percent_Identity=29.7101449275362, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=34.2465753424658, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=34.2465753424658, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87082093, Length=360, Percent_Identity=31.6666666666667, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=25.2475247524752, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=25.5980861244019, Blast_Score=130, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI32564160, Length=266, Percent_Identity=26.6917293233083, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=369, Percent_Identity=25.4742547425474, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=33.1670822942643, Blast_Score=185, Evalue=6e-47,
Organism=Drosophila melanogaster, GI24585488, Length=299, Percent_Identity=29.7658862876254, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44322; Mature: 44322

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDQDTHAVSPDAHCTGPLAGLRILDMATVVAGPFSATLCADMGADVVKLELPDGSDPLR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCC
GLEPVTEDHALYWKVTNRGKRGISLDVRTPRGREIFLRLLPQFDVLVENFRTGTLTRWGL
CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
DLDTLHAANPKLIVLRLTGFGQTGPDAARPGFARIFEARSGFTNLAGTAQSGPMHMNYPV
CHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCEEECCCH
GDMIAGLFGAFAIATAVAEQRARPGQRGREIDLAATEALFRLLDPLAIEYEQLGHVRQRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNRTTYAAPSNMYRTADEIWVTVVASSDATFRRLAEAMGAPQLAQAPEYATNAGRVRNIE
CCCCEECCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCHHCCCCHHCCCCCEEEHH
ALDGSIAEWFAAQPYAAVAARLEQCQVPFSKVFSIADIVDDPQMAARQAIVRLPDPDLGS
HHCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCC
VPAPCVVPRFSGYAPPSPRTGPDVGEHNAEVYGRLGIGDEELVRLRAEGVV
CCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQDQDTHAVSPDAHCTGPLAGLRILDMATVVAGPFSATLCADMGADVVKLELPDGSDPLR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCC
GLEPVTEDHALYWKVTNRGKRGISLDVRTPRGREIFLRLLPQFDVLVENFRTGTLTRWGL
CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
DLDTLHAANPKLIVLRLTGFGQTGPDAARPGFARIFEARSGFTNLAGTAQSGPMHMNYPV
CHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCEEECCCH
GDMIAGLFGAFAIATAVAEQRARPGQRGREIDLAATEALFRLLDPLAIEYEQLGHVRQRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNRTTYAAPSNMYRTADEIWVTVVASSDATFRRLAEAMGAPQLAQAPEYATNAGRVRNIE
CCCCEECCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCHHCCCCHHCCCCCEEEHH
ALDGSIAEWFAAQPYAAVAARLEQCQVPFSKVFSIADIVDDPQMAARQAIVRLPDPDLGS
HHCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCC
VPAPCVVPRFSGYAPPSPRTGPDVGEHNAEVYGRLGIGDEELVRLRAEGVV
CCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]