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The map label for this gene is pimA [C]

Identifier: 116694324

GI number: 116694324

Start: 417282

End: 419438

Strand: Direct

Name: pimA [C]

Synonym: H16_B0370

Alternate gene names: 116694324

Gene position: 417282-419438 (Clockwise)

Preceding gene: 116694323

Following gene: 116694325

Centisome position: 14.33

GC content: 68.89

Gene sequence:

>2157_bases
ATGTCGCAACGAGAATTTCCATCAGGCATCCGGTCCCTGGATGCCGTGTTCCGCCCGAGATCCATCGCCGTGGTTGGCGC
GTCGGATGATCCGACGCGCATCAATGGACGCCCGATCGCCTTCGCCAGGCGCTTCGGCTACGAAGGCGCCATCTATCCCA
TCAATCCGTCGCGTCAGACCGTGCAGGGCCTGCGGGCGTATCCGAGCCTGCGCGACGCGCCCGACGGTATCGACTGCGCG
ATCATCGCGCTGCCGGCCGCGCTCGTGATCGACGCCCTGCACCAGTGCGCTGGCAAGGGCATCCGTGCCGTGGTGCTCTT
CACCAGCGGCTTCGCCGAACTCGGGGAAGCGGGCCAGCGCAAGCAGGAGGAGATCACGCGGATCGCCAGGGCCCACGGCA
TCCGGCTGCTCGGCCCCAATGTGATCGGCTGCTTCTGCCTCAGCCGCAAGACCTACGTGACCTTTCTCAGCGATGTGGAC
GGCGCACTGCCGGCCGGCAAGCCGCGTATCGGACTGGTCAGCCAGAGCGGCGGCTATGGCGCGCATATCTACAAGCTGGC
GCTGCAGCGCGGCCTCGCCGTCGACCAGGTGGTGACCACCGGCAACGAGGCCGACATCGAACTGGGCGAGGTGATGGAGT
GGATGGCGGAGTCGCCCGATGTCGACATCATCGTCGGCTATATCGAGGGCATCCGCTCGAAGGCGTCGTTCATTCGCGGC
CTGGAGGCTGCGCATCGCAAGCGCAAGCCCGTGGTGCTGATGAAGGTGGGCGCCACGCAGGCGGGCGCAGCGGCGGCCGC
ATCGCACACGGCCGCGCTTGCCGGCGCCGATGCCGTGTACGACGCCTTGCTGCGCGAGTATGGCGCCTACCGCGCCAGGT
CGAACGAGGAAGTGCTGGACGTCGTGTACGCGCTGAGCGCCGGCAAGCCCCTGCGCAAGCGCAAGCTGGGCGTGGTCACC
ATCTCCGGTGGCGCCGGCGTGCAGATTGCCGATTTCGCATCGGAAGCGGGGCTGGACCTGCCGATGCCATCGGAAGCCAC
GCAACGCGCACTGCGCGAGATCGCACCGTTCGGCTCGCCCGCCAATCCGGTCGATGTGACGGCACAGATCTCCAACGACC
CCGAGATCTTCACGGCGACGCTGGACCGGCTGCTCGACGCCGGCTATGACTCGCTCCTGATGTGGCTCGGCCCGGCCGTG
ACCAATGCGCGCGCCGGTGCTCCGATTCGGGCAACCATCGAACGCATTGCCGCCACGCGCCCGGATGTGCTGCAGACCAT
CAACCTGATCGGCGGGGCCGAGGTGACAAGCGTCTACGAAGCCGCCGGCTGCCTGCTGTTCGAGGAACCGCGCCGCGCGG
TCCAGGCGCTGGCCGCACTGCGGTATTTCGAGCGCGTGTTCTCGCGGCCGCTGCCGGTCCGGCCCGACGTGTCGCAGATG
ACGCTGCTGGCGCCGGATACCACGTACAACGAGGTGGATGCCAAGCGGGTGCTGGCGGGCGCCGGGGTGGCCCTGCTCGA
CGAGCGGCTGGTGCATACCCCGGCGCAAGCCGCCGAGGCTGCGCGCGAGATCGGCCGGCCGGTAGCGGTCAAGGTCGTGT
CGGCCGACATCCAGCACAAGTCCGACGTCGGCGGCGTGGCGCTGTCGCTTGCCTCGCCGGAAGAGGCTGCGCAAGCGGTG
CGGCGCATGGCGGGCGAGATCCCGCGCAAGGCGCCAACGGCGCGCATCGATGGCTACCTGGTGTCGCCCATGCTGAACGA
CGGCGTGGAGTGCATCGTCGGCGTGCATGCAGATCCCCTGTTCGGCCCGGTAGTGATGTTCGGCCTCGGCGGCGTGATGG
TGGAAGTCATGCAGGACGTCGCGTTCGCGCTGGCGCCGCTGGACGAAGCCGGCGCGCTCGAGCTGGTCCGCAGGGTGAAA
GGCCATCGCCTGCTGACCGGCTTCCGGGGCAGGCCGCCGGCGGATCTGCCAGCCCTCGCGCGCGCCATCGCGAGCATTTC
CCGGCTTGCCGCACGCAATGCCGACCGCCTTCAGGCACTCGAAGTCAACCCGCTGTGCGTCCTGCCCGAAGGGCAGGGCG
TCGTGGCCCTCGACGCCGTCGTGCAGACCGGCGCACCGGGCCTGCCCATTGCACACCCGCCTGCCAAACAGGATTGA

Upstream 100 bases:

>100_bases
TCATGGAGCGCCTGATCAAGGTATCCGGCGCCGCGGGGGAATGAGCGCGGCCTGGCGGTCTGGTCCCGTTTTCATGTGAA
GTCCGTTTGTCGAGGAGAGT

Downstream 100 bases:

>100_bases
TCGACATGGATCTTTGTCTGACTCCCTCCCAACTCGCATTCCGCGACGACGTGCGCGCCTTCATCGCGGCGCGCCTGCCT
GCCGGCATCCGCGAACGCCT

Product: pimeloyl-CoA synthetase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 717

Protein sequence:

>718_residues
MSQREFPSGIRSLDAVFRPRSIAVVGASDDPTRINGRPIAFARRFGYEGAIYPINPSRQTVQGLRAYPSLRDAPDGIDCA
IIALPAALVIDALHQCAGKGIRAVVLFTSGFAELGEAGQRKQEEITRIARAHGIRLLGPNVIGCFCLSRKTYVTFLSDVD
GALPAGKPRIGLVSQSGGYGAHIYKLALQRGLAVDQVVTTGNEADIELGEVMEWMAESPDVDIIVGYIEGIRSKASFIRG
LEAAHRKRKPVVLMKVGATQAGAAAAASHTAALAGADAVYDALLREYGAYRARSNEEVLDVVYALSAGKPLRKRKLGVVT
ISGGAGVQIADFASEAGLDLPMPSEATQRALREIAPFGSPANPVDVTAQISNDPEIFTATLDRLLDAGYDSLLMWLGPAV
TNARAGAPIRATIERIAATRPDVLQTINLIGGAEVTSVYEAAGCLLFEEPRRAVQALAALRYFERVFSRPLPVRPDVSQM
TLLAPDTTYNEVDAKRVLAGAGVALLDERLVHTPAQAAEAAREIGRPVAVKVVSADIQHKSDVGGVALSLASPEEAAQAV
RRMAGEIPRKAPTARIDGYLVSPMLNDGVECIVGVHADPLFGPVVMFGLGGVMVEVMQDVAFALAPLDEAGALELVRRVK
GHRLLTGFRGRPPADLPALARAIASISRLAARNADRLQALEVNPLCVLPEGQGVVALDAVVQTGAPGLPIAHPPAKQD

Sequences:

>Translated_718_residues
MSQREFPSGIRSLDAVFRPRSIAVVGASDDPTRINGRPIAFARRFGYEGAIYPINPSRQTVQGLRAYPSLRDAPDGIDCA
IIALPAALVIDALHQCAGKGIRAVVLFTSGFAELGEAGQRKQEEITRIARAHGIRLLGPNVIGCFCLSRKTYVTFLSDVD
GALPAGKPRIGLVSQSGGYGAHIYKLALQRGLAVDQVVTTGNEADIELGEVMEWMAESPDVDIIVGYIEGIRSKASFIRG
LEAAHRKRKPVVLMKVGATQAGAAAAASHTAALAGADAVYDALLREYGAYRARSNEEVLDVVYALSAGKPLRKRKLGVVT
ISGGAGVQIADFASEAGLDLPMPSEATQRALREIAPFGSPANPVDVTAQISNDPEIFTATLDRLLDAGYDSLLMWLGPAV
TNARAGAPIRATIERIAATRPDVLQTINLIGGAEVTSVYEAAGCLLFEEPRRAVQALAALRYFERVFSRPLPVRPDVSQM
TLLAPDTTYNEVDAKRVLAGAGVALLDERLVHTPAQAAEAAREIGRPVAVKVVSADIQHKSDVGGVALSLASPEEAAQAV
RRMAGEIPRKAPTARIDGYLVSPMLNDGVECIVGVHADPLFGPVVMFGLGGVMVEVMQDVAFALAPLDEAGALELVRRVK
GHRLLTGFRGRPPADLPALARAIASISRLAARNADRLQALEVNPLCVLPEGQGVVALDAVVQTGAPGLPIAHPPAKQD
>Mature_717_residues
SQREFPSGIRSLDAVFRPRSIAVVGASDDPTRINGRPIAFARRFGYEGAIYPINPSRQTVQGLRAYPSLRDAPDGIDCAI
IALPAALVIDALHQCAGKGIRAVVLFTSGFAELGEAGQRKQEEITRIARAHGIRLLGPNVIGCFCLSRKTYVTFLSDVDG
ALPAGKPRIGLVSQSGGYGAHIYKLALQRGLAVDQVVTTGNEADIELGEVMEWMAESPDVDIIVGYIEGIRSKASFIRGL
EAAHRKRKPVVLMKVGATQAGAAAAASHTAALAGADAVYDALLREYGAYRARSNEEVLDVVYALSAGKPLRKRKLGVVTI
SGGAGVQIADFASEAGLDLPMPSEATQRALREIAPFGSPANPVDVTAQISNDPEIFTATLDRLLDAGYDSLLMWLGPAVT
NARAGAPIRATIERIAATRPDVLQTINLIGGAEVTSVYEAAGCLLFEEPRRAVQALAALRYFERVFSRPLPVRPDVSQMT
LLAPDTTYNEVDAKRVLAGAGVALLDERLVHTPAQAAEAAREIGRPVAVKVVSADIQHKSDVGGVALSLASPEEAAQAVR
RMAGEIPRKAPTARIDGYLVSPMLNDGVECIVGVHADPLFGPVVMFGLGGVMVEVMQDVAFALAPLDEAGALELVRRVKG
HRLLTGFRGRPPADLPALARAIASISRLAARNADRLQALEVNPLCVLPEGQGVVALDAVVQTGAPGLPIAHPPAKQD

Specific function: Unknown

COG id: COG1042

COG function: function code C; Acyl-CoA synthetase (NDP forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfiQ [H]

Homologues:

Organism=Escherichia coli, GI1788938, Length=713, Percent_Identity=26.367461430575, Blast_Score=206, Evalue=5e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014089
- InterPro:   IPR013650
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR005809
- InterPro:   IPR016102 [H]

Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]

EC number: NA

Molecular weight: Translated: 75871; Mature: 75740

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50975 ATP_GRASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQREFPSGIRSLDAVFRPRSIAVVGASDDPTRINGRPIAFARRFGYEGAIYPINPSRQT
CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCHHH
VQGLRAYPSLRDAPDGIDCAIIALPAALVIDALHQCAGKGIRAVVLFTSGFAELGEAGQR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCH
KQEEITRIARAHGIRLLGPNVIGCFCLSRKTYVTFLSDVDGALPAGKPRIGLVSQSGGYG
HHHHHHHHHHHCCCEEECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCH
AHIYKLALQRGLAVDQVVTTGNEADIELGEVMEWMAESPDVDIIVGYIEGIRSKASFIRG
HHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
LEAAHRKRKPVVLMKVGATQAGAAAAASHTAALAGADAVYDALLREYGAYRARSNEEVLD
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VVYALSAGKPLRKRKLGVVTISGGAGVQIADFASEAGLDLPMPSEATQRALREIAPFGSP
HHHHHHCCCCHHHCCCCEEEECCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
ANPVDVTAQISNDPEIFTATLDRLLDAGYDSLLMWLGPAVTNARAGAPIRATIERIAATR
CCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
PDVLQTINLIGGAEVTSVYEAAGCLLFEEPRRAVQALAALRYFERVFSRPLPVRPDVSQM
HHHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
TLLAPDTTYNEVDAKRVLAGAGVALLDERLVHTPAQAAEAAREIGRPVAVKVVSADIQHK
EEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEHHHCCC
SDVGGVALSLASPEEAAQAVRRMAGEIPRKAPTARIDGYLVSPMLNDGVECIVGVHADPL
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHCCCCEEEEECCCCCH
FGPVVMFGLGGVMVEVMQDVAFALAPLDEAGALELVRRVKGHRLLTGFRGRPPADLPALA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
RAIASISRLAARNADRLQALEVNPLCVLPEGQGVVALDAVVQTGAPGLPIAHPPAKQD
HHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQREFPSGIRSLDAVFRPRSIAVVGASDDPTRINGRPIAFARRFGYEGAIYPINPSRQT
CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCHHH
VQGLRAYPSLRDAPDGIDCAIIALPAALVIDALHQCAGKGIRAVVLFTSGFAELGEAGQR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCH
KQEEITRIARAHGIRLLGPNVIGCFCLSRKTYVTFLSDVDGALPAGKPRIGLVSQSGGYG
HHHHHHHHHHHCCCEEECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCH
AHIYKLALQRGLAVDQVVTTGNEADIELGEVMEWMAESPDVDIIVGYIEGIRSKASFIRG
HHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
LEAAHRKRKPVVLMKVGATQAGAAAAASHTAALAGADAVYDALLREYGAYRARSNEEVLD
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VVYALSAGKPLRKRKLGVVTISGGAGVQIADFASEAGLDLPMPSEATQRALREIAPFGSP
HHHHHHCCCCHHHCCCCEEEECCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
ANPVDVTAQISNDPEIFTATLDRLLDAGYDSLLMWLGPAVTNARAGAPIRATIERIAATR
CCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
PDVLQTINLIGGAEVTSVYEAAGCLLFEEPRRAVQALAALRYFERVFSRPLPVRPDVSQM
HHHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
TLLAPDTTYNEVDAKRVLAGAGVALLDERLVHTPAQAAEAAREIGRPVAVKVVSADIQHK
EEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEHHHCCC
SDVGGVALSLASPEEAAQAVRRMAGEIPRKAPTARIDGYLVSPMLNDGVECIVGVHADPL
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHCCCCEEEEECCCCCH
FGPVVMFGLGGVMVEVMQDVAFALAPLDEAGALELVRRVKGHRLLTGFRGRPPADLPALA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
RAIASISRLAARNADRLQALEVNPLCVLPEGQGVVALDAVVQTGAPGLPIAHPPAKQD
HHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]