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The map label for this gene is yulB [H]

Identifier: 116694274

GI number: 116694274

Start: 358045

End: 358824

Strand: Direct

Name: yulB [H]

Synonym: H16_B0320

Alternate gene names: 116694274

Gene position: 358045-358824 (Clockwise)

Preceding gene: 116694273

Following gene: 116694279

Centisome position: 12.29

GC content: 69.1

Gene sequence:

>780_bases
ATGAAAGCCGCCGACCGCCGCCGCGCCATTCTCGAACTCGTGCTCTCGGGCGAGGTCGCCAATGTCGAACAGTTGACCGG
CAGCCTCGGGGTATCCGTGGCCACGGTGCGCCGCGATCTGACCGCGTTGGCTCGCGAGGGTCGCATTGTGCGGACCTATG
GCGGCGCCGCCGCGCTGATGCAGGTGGGCGGCCACGAGCCAGAGGCTTCGCTTGAGGAGCGCAAGTCGCTGCAGCGTGAG
CAGAAGGAAGCCATTGCCCGCCTGGCGGCGAGCTTCGTGCAGGACGGCGACGCCGTGCTGCTCGATAGCGGCACCACGGC
CGCCGCGCTGGCTCGGCAGCTGGGGGCGCGCGAGGACCTCCATGTCTATACCACCAACCTGCTGGCCGTCACCGCGCTCA
CCGGCCTGCCCGGCATCCGCGTGACGCTGATCGGCGGCGACGTGCGCCCCTCCAGCATGGGCACCTTCGGTCCGCTGGCC
CAGGTAACGCTGTCGCGCATCAGCGTCGACAAGGCGTTCCTTGGCGCGGACGGCGTGGTTGCAGGCGTGGGGCTGTGCGA
AGCCAGCGCGGAGCAGGCCTACCTGAAGGAGTGCATCGTCCGCCAGGCGGCCGATATCTTTGTGCTGGCCGACGCTACCA
AGCTGGGCCGGGCACAGCAGCAGCACTGGACGCCGCTCGACCGCGCATGGACGTTGATTACCGATGCGGCGGCCACGGCC
GAGCAGTTGGAACCGTTCCAGGCATTGAAGCAGGTACGTGTGGCGGTCGCCCCCGACTGA

Upstream 100 bases:

>100_bases
CTGGCCACGCGCCGCGCCTGAGCCATCGGCGTACGCCGGGGCTGCCGGCTCCTGTAAGATCGGGGATCGTTGAGGATCCC
CCATTTTCATTTCGCCTGCC

Downstream 100 bases:

>100_bases
TTCCCCGCGCGCAGCTGCTGCTGAGAAGCGCTAATTCTGCGAGCGACGCCCCGTCAGGTGATCGCGCCAAGCTGCCAGGG
AACGAACTCGTTCTGGCCGT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKAADRRRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALMQVGGHEPEASLEERKSLQRE
QKEAIARLAASFVQDGDAVLLDSGTTAAALARQLGAREDLHVYTTNLLAVTALTGLPGIRVTLIGGDVRPSSMGTFGPLA
QVTLSRISVDKAFLGADGVVAGVGLCEASAEQAYLKECIVRQAADIFVLADATKLGRAQQQHWTPLDRAWTLITDAAATA
EQLEPFQALKQVRVAVAPD

Sequences:

>Translated_259_residues
MKAADRRRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALMQVGGHEPEASLEERKSLQRE
QKEAIARLAASFVQDGDAVLLDSGTTAAALARQLGAREDLHVYTTNLLAVTALTGLPGIRVTLIGGDVRPSSMGTFGPLA
QVTLSRISVDKAFLGADGVVAGVGLCEASAEQAYLKECIVRQAADIFVLADATKLGRAQQQHWTPLDRAWTLITDAAATA
EQLEPFQALKQVRVAVAPD
>Mature_259_residues
MKAADRRRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALMQVGGHEPEASLEERKSLQRE
QKEAIARLAASFVQDGDAVLLDSGTTAAALARQLGAREDLHVYTTNLLAVTALTGLPGIRVTLIGGDVRPSSMGTFGPLA
QVTLSRISVDKAFLGADGVVAGVGLCEASAEQAYLKECIVRQAADIFVLADATKLGRAQQQHWTPLDRAWTLITDAAATA
EQLEPFQALKQVRVAVAPD

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=238, Percent_Identity=30.2521008403361, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789829, Length=221, Percent_Identity=31.2217194570136, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789519, Length=241, Percent_Identity=29.045643153527, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI226510968, Length=235, Percent_Identity=31.4893617021277, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788069, Length=241, Percent_Identity=28.2157676348548, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787540, Length=246, Percent_Identity=27.2357723577236, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082344, Length=209, Percent_Identity=29.1866028708134, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790753, Length=242, Percent_Identity=26.0330578512397, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789170, Length=243, Percent_Identity=27.1604938271605, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790635, Length=248, Percent_Identity=25.4032258064516, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787063, Length=224, Percent_Identity=26.3392857142857, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27351; Mature: 27351

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAADRRRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALM
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCHHHHH
QVGGHEPEASLEERKSLQREQKEAIARLAASFVQDGDAVLLDSGTTAAALARQLGAREDL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCC
HVYTTNLLAVTALTGLPGIRVTLIGGDVRPSSMGTFGPLAQVTLSRISVDKAFLGADGVV
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
AGVGLCEASAEQAYLKECIVRQAADIFVLADATKLGRAQQQHWTPLDRAWTLITDAAATA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHHHHCCCHHHHHHHHHHHHHHH
EQLEPFQALKQVRVAVAPD
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAADRRRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALM
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCHHHHH
QVGGHEPEASLEERKSLQREQKEAIARLAASFVQDGDAVLLDSGTTAAALARQLGAREDL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCC
HVYTTNLLAVTALTGLPGIRVTLIGGDVRPSSMGTFGPLAQVTLSRISVDKAFLGADGVV
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
AGVGLCEASAEQAYLKECIVRQAADIFVLADATKLGRAQQQHWTPLDRAWTLITDAAATA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHHHHCCCHHHHHHHHHHHHHHH
EQLEPFQALKQVRVAVAPD
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]