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The map label for this gene is ltrA [H]

Identifier: 116694124

GI number: 116694124

Start: 193718

End: 194698

Strand: Direct

Name: ltrA [H]

Synonym: H16_B0169

Alternate gene names: 116694124

Gene position: 193718-194698 (Clockwise)

Preceding gene: 116694121

Following gene: 116694127

Centisome position: 6.65

GC content: 69.83

Gene sequence:

>981_bases
GTGAACGAAACAATCCAATGGAATGATTGGGAGGCGTTCTGCTGCGTGGTCGAGCAGGGGACGTTCACGGCCGCGGCGGA
GCAGCTGGACTGCCCCAAGTCGCGTGTCTCGGCCGCAGTGGCGCGGCTGGAAACCGCCATCGGCGCCAAGCTGCTGGAGC
GCACCACGCGGCGCATGCGCCTCACGGATGCTGGCAAGGCGGTCTACCGCGATGTCGCCCCCTTGTTTGCGCGCCTGCGC
GAGATCCGCCAGGAAACGCTGGCGCGTGAGGAGCGCGTACAGGGCGTGCTGCGCATCGCCACACCCTATGAGTTCGGCGC
CCAGCAACTGGGTGGCGTGATCTGCCGCACGCTGGCGGCGCATCCGGCGCTGGACGTGGCCGTGGAAATCACCCAGGGCC
TGGTCGACCCGATCCGCGACGGGTTTGACGTGGCCTTCGTCGTCGTCGACACCGACCTGCCCGACTCCGGCACGGTGGCG
CGCCGCATCTACCATGTCGAGCGCGGCCTCTTTGCCGCGCCGGCGCTGGCGGCCAGCCTGCCGGCGCAGTTGCGCCCGGA
AGACCTGGCCAATATGCCGACGCTGACCACGCCCGGCGACACCGTCTGGGAATTCACCCGCGACGGCCAGACCGTGTCCG
TGCCGATCCGTCCGCGCATGCAGACCCACAACGCCGAACTGCGGCTGCAGGGCGCGCTGGCTGGGCTGGGCATCGCCCGG
CTGTCGGTCATTTATTGCGAGGCCGAGATCGCGCAAGGGCGGCTGGTGCGCGTGTTGCCTGACTATCCTCTGCCGCCGCT
GCGCGTATTCGCGCTGCTGCCGGACCGGCGGCTGCAGCCGCGCAAGGTGCGGGCCTTCATGGAAGCGATCGAATCGATGA
TGGTGTCCGAGCTGGAGCCCGAGGCGGGCCTGGACGGGGGGATGGGGGCGGAAGCAGCCGCGAGCGGGCAGGCTGAAGGA
GCGGCCCGCACGGCGGGTTGA

Upstream 100 bases:

>100_bases
TGAGGCGTCCGGTCCAGCGGGGACAGGCGTTTGTTGCATCGCTCAAGCATAATGTAGGCCTGCCGTCGGGAACTACAGCT
TGTCAGGGAAACATTGTCCG

Downstream 100 bases:

>100_bases
GGGCGCTGGCGGGCCGCCACGGCCGGGGCCGTGGCAACGGAAAGGGCAGGAGCTCAGGCGCCGTCGGTGAATGCGTCGCG
GCGGTCGGTGGTCCTGGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDAGKAVYRDVAPLFARLR
EIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPALDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVA
RRIYHVERGLFAAPALAASLPAQLRPEDLANMPTLTTPGDTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGLGIAR
LSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIESMMVSELEPEAGLDGGMGAEAAASGQAEG
AARTAG

Sequences:

>Translated_326_residues
MNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDAGKAVYRDVAPLFARLR
EIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPALDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVA
RRIYHVERGLFAAPALAASLPAQLRPEDLANMPTLTTPGDTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGLGIAR
LSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIESMMVSELEPEAGLDGGMGAEAAASGQAEG
AARTAG
>Mature_326_residues
MNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDAGKAVYRDVAPLFARLR
EIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPALDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVA
RRIYHVERGLFAAPALAASLPAQLRPEDLANMPTLTTPGDTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGLGIAR
LSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIESMMVSELEPEAGLDGGMGAEAAASGQAEG
AARTAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=316, Percent_Identity=28.7974683544304, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=28.3216783216783, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=28.2312925170068, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1786401, Length=282, Percent_Identity=30.4964539007092, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789440, Length=259, Percent_Identity=25.4826254826255, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787589, Length=266, Percent_Identity=29.3233082706767, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789173, Length=293, Percent_Identity=24.9146757679181, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=21.8543046357616, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35469; Mature: 35469

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50931 HTH_LYSR ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMR
CCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDAGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHC
HPALDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVARRIYHVERGLFAAPALAASL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHC
PAQLRPEDLANMPTLTTPGDTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGLGIAR
CCCCCCHHHCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHH
LSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIESMMVSELEP
HHHEEEEHHHCCCCEEEECCCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
EAGLDGGMGAEAAASGQAEGAARTAG
CCCCCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNETIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMR
CCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDAGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHC
HPALDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVARRIYHVERGLFAAPALAASL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHC
PAQLRPEDLANMPTLTTPGDTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGLGIAR
CCCCCCHHHCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHH
LSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIESMMVSELEP
HHHEEEEHHHCCCCEEEECCCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
EAGLDGGMGAEAAASGQAEGAARTAG
CCCCCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]