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The map label for this gene is cmpR [H]

Identifier: 116691164

GI number: 116691164

Start: 3465529

End: 3466464

Strand: Direct

Name: cmpR [H]

Synonym: Bcen2424_3146

Alternate gene names: 116691164

Gene position: 3465529-3466464 (Clockwise)

Preceding gene: 116691161

Following gene: 116691166

Centisome position: 99.47

GC content: 69.34

Gene sequence:

>936_bases
GTGTTCGATCAGCTGAAGGCGTTCCACGCGACCGTCCGGCAGGGCAGCATCACGCGCGCTGCGCGCCACCTGGGCGTGAG
CCAGCCGACGATTGCCGCGCAGATCCGGCAGGTCGAGCAGGTGTACGGCGTCGAGCTGTTCTACCGCAGCGGCCGCAAGC
TCGAGGTGACCGAGACGGGCATCGAGCTGCTGCCGCTCGTCGAGAAGATGATCGCGCTCGAGGCGCAGGCCGACATCATG
CTGCGCAACGTCGGCGGCTTGTTCGAGGGCCATCTGCGGATCGGCGCGACGGGCCCGTACTACATCATGGATGCGGTCGG
CCGCTTCTCGAGCGCGCACCCGTCGATCGCGCTCACGTGCCGGATCGGCAACTCCGAGGAAATCCTGCAGGCGCTGCAGG
AATTCCGCATCGATCTCGCGGTCTCGTCGCAGCGCAACGACGCCGACGGCCTCGAACGCAAGGTGATCTCGACCGATCCG
CTCGTGCTCGTCGTGCACCGCCAGCATCCGCTCGCGCGGTTCGAGTCGATCGACGCGGCGCGGCTCGCCGGCGTGCGGCT
GCTGATGCGCGAGGAAGGGTCGGTCACGCGCCGCTGCACGGAGACGATCCTCGCCGCGGCCGGCGTCGCGGCCACCTCGG
TCGCCGAGATCGGCAGCCGCGAAGCGATTCGCGAGGCGATCCTGCATGGCGTGGGCGGCAGCCTGTTTCCGCTCGGCGAG
GCCGAACGCCATCCGGACCTGCGCGTGATCGCGCTGCGCGGCGTCGACACGACGATCGACGAATACGTGTACTACCTGAA
AGCGCGCCGCCAGAGCCCCGCGATCGATGCGTTCCTTGCGTGCATCCTGCCGGGCGGCGGCGAAGCGGCCGACGTGGTCG
ATGCTGCCGACGCGATCGAAACCGGACGAACGATGCGGCGGGCGAACGCGCGCTGA

Upstream 100 bases:

>100_bases
CCCCCAGCTTTTTTTCGAAGTCTCGCACGGCGCGCCTTTCATCCGGCCGACATATCCGTGCGCTACGCTGACGCGCGATG
AAGAGGGGAGAAGCCGAGTC

Downstream 100 bases:

>100_bases
GCCGCCGCGCGTTCACCGCTTCCGCACACTACGTGGCGCTTTTCCCGCGCCTTCCCTCGTTGCTTCCCTCGTGCCTTCCT
TCTGTCGCCGCGCCGCGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSSAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRQHPLARFESIDAARLAGVRLLMREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPGGGEAADVVDAADAIETGRTMRRANAR

Sequences:

>Translated_311_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSSAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRQHPLARFESIDAARLAGVRLLMREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPGGGEAADVVDAADAIETGRTMRRANAR
>Mature_311_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSSAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRQHPLARFESIDAARLAGVRLLMREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPGGGEAADVVDAADAIETGRTMRRANAR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=294, Percent_Identity=29.9319727891156, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788481, Length=237, Percent_Identity=30.379746835443, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790399, Length=222, Percent_Identity=26.5765765765766, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=22.8070175438596, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=22.7272727272727, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082132, Length=285, Percent_Identity=25.2631578947368, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=282, Percent_Identity=24.822695035461, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788626, Length=264, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788296, Length=242, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081904, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=299, Percent_Identity=22.742474916388, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=291, Percent_Identity=25.4295532646048, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33850; Mature: 33850

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTETG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSSAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHCCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRQHPLARFESIDAA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHCCCHH
RLAGVRLLMREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPLGE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPGGGEAADVVDAADAIE
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
TGRTMRRANAR
HHHHHHHCCCC
>Mature Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTETG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSSAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHCCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRQHPLARFESIDAA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHCCCHH
RLAGVRLLMREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPLGE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPGGGEAADVVDAADAIE
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
TGRTMRRANAR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]