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The map label for this gene is dapF [H]

Identifier: 116691103

GI number: 116691103

Start: 3398456

End: 3399385

Strand: Direct

Name: dapF [H]

Synonym: Bcen2424_3085

Alternate gene names: 116691103

Gene position: 3398456-3399385 (Clockwise)

Preceding gene: 116691100

Following gene: 116691104

Centisome position: 97.55

GC content: 68.82

Gene sequence:

>930_bases
ATGGCCGCCGGCCGCCCGTGTCGTGCCGACCGCCTTGTTCGCCATGGAATTCCGGACCCAGTGAAACTCTCGTTCACCAA
GATGCACGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTATTCGCGCGCGCTGCCGCCGCTCACCGAAGCGCAGGTGC
GCGCACTCGCCAACCGCCATTTCGGCATCGGCGCCGACCAGTTGCTGCTGGTCGAGAAACCGACCGTCGACGGCGCGGAT
TTCAAGTACCGGATCTTCAATTGCGACGGCGGCGAGGTCGAACACTGCGGCAACGGCGCGCGTTGTTTCGTGAAGTTCGT
CAGCGACCGCGGCCTGACCGACCAGCGCAGCGTGCGCGTGCAGGTCATGAAGGGCCTGATCACGCTGACGTTGCAGGAGA
ACGGCGAAGTCGTCGTCGACATGGGCGCGCCCGTGTTCGCGCCGGCGCAGGTGCCGTTCGACGCAGCGGGGCTCGACAGC
CGCAAGGAAGGCAACGACACGCTGTGGCCGCTCGACGTGGGCGGCGCGACGCGCTGGATTTCGACGGTGTCGATGGGCAA
TCCGCACGCGGTGCAGGTCGTCGACGACGTCGAAGCGTATCCGGTGCTGGAAGAAGGCCCGCTGATCGAGCGCCATGCGC
GCTTCCCGCAGCGCGTGAACGCCGGCTTCATGCAGATCGTGTCGCGCCACGAAGTGAAGCTGCGCGTGTACGAACGCGGC
GCGGGCGAGACGCTCGCGTGCGGCACCGGCGCGTGCGCGGCGGTCGCGGCCGGCATCCGGCGCGGCCTGCTCGATTCGCC
CGTGACCGTGCACACGCACGGCGGCACGCTGACGATCGGCTGGGACGGCGCGCGCGACGAAGCCGCCGCGCTGATGATGG
CCGGCCCCGCCACGACCGTGTTCGAAGGTGAGATCGACCTGAACGCCTGA

Upstream 100 bases:

>100_bases
GCAGGAGCAACCTGAAGCACCGTCCCCGCGCAGGACGCCCCTCTCGGCTGCATGTATCATTTGCGGTTGAGATCAGCACG
ACGAACAACGCTGCCCCGGC

Downstream 100 bases:

>100_bases
CCCTGCAACGTCCCTGATAACTGAACGCTCCCGCCACATGAACGATCGCGAAGTCGCCGACTACCTGCTCGCCAACCCCG
AATTCTTCGCGCAGCACGCC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MAAGRPCRADRLVRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD
FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDMGAPVFAPAQVPFDAAGLDS
RKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVDDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERG
AGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA

Sequences:

>Translated_309_residues
MAAGRPCRADRLVRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD
FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDMGAPVFAPAQVPFDAAGLDS
RKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVDDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERG
AGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA
>Mature_308_residues
AAGRPCRADRLVRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF
KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDMGAPVFAPAQVPFDAAGLDSR
KEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVDDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGA
GETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=285, Percent_Identity=48.4210526315789, Blast_Score=262, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 33081; Mature: 32950

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGRPCRADRLVRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRH
CCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
FGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRV
CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHH
QVMKGLITLTLQENGEVVVDMGAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWI
EEEECEEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEE
STVSMGNPHAVQVVDDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERG
EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHCHHHHHHHHCCCEEEEEEECC
AGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTV
CCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEECCCCEE
FEGEIDLNA
EEEEEECCC
>Mature Secondary Structure 
AAGRPCRADRLVRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRH
CCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
FGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRV
CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHH
QVMKGLITLTLQENGEVVVDMGAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWI
EEEECEEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEE
STVSMGNPHAVQVVDDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERG
EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHCHHHHHHHHCCCEEEEEEECC
AGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTV
CCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEECCCCEE
FEGEIDLNA
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA